Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00940 ATGGATTCAAACGGGAGCCTACGTGCTAACACTTGGGCAAGGTCACCACCGTTAACCTCTGCTGCAAGTGGTTTATCCTCAGATCCTCTTTCTTTCCCAGGTTTTGGTTTGCAGAATAATCAACCCAAATGGGATGGTCCCTCAAGTTCAGATTTTGGTATCAGGGTAGAATCTCCTTTCAAAGAATTCAACCAGCCCTCTCAAAACCAGTCTCCACTTGCTTGCAATTCAAACAATGAGATTGAATTCACTGATCAAGAAAACCGTCATCAGAGTGAATCATCACAGACTAGTAGAGTCCAAGATTGGGACCCCAGTGTGATGCTGAATAACTTGTCCTTCCTTGAAGAAAAGATTCATCAGCTCCGGGATCTAGTGCATTTGATTGTTCGTCAAAAAGGCGTTAGAGTTGGACAGCCTAATGAACTTGTAACTCAGGAACAGCAACTCATCACTACTGATCTTACCTCAATCATTATTCAGTTGATCTCTACTGCAGGTAGTCTTCTCCCTTCTGCTAGGAGTAGCCTTATAAACACTAGTCCATTGGTTGCACAGATTGATCAGCTTCAAGGGACTAGTGTTCCTTCAGGAACAGGTGCAAGTAGTAGCTGTATTCAACCACAAAACATTGGTGGGAAAAAAGTGTCTGATCAGTCCATGCAGACTGATCTACCTAATAATTGTGAAATGGAGCAAAACTACAATATGGTTGAACATGATCTCAAAGATGAAGAAGATGCAGATGATGGAGAAAACCTTGCCCCTGGTTCTTATGAGATTTTACAGTTAGAAAAAGAAGAAATCCTTGCACCTCATACCCATTTCTGTACAATTTGTGGGAAGGGGTTCAAGAGAGACGCGAATCTTCGTATGCACATGCGCGGCCATGGCGACGAGTACAAAACCGCAGCAGCGCTGGCGAAGCCACACAAAGAATCTGGCTCGCCAAAGCTTATCAAGAGGTATTCCTGCCCCTATCCTGGCTGCAAGCGCAACAAGGATCACAAGAAGTTTCAGCCTCTGAAGACTATCTTGTGCGTCAAAAACCACTACAAAAGGACACATTGTGACAAGAGTTACACTTGCAGCAGGTGCAACACCAAGAAGTTCTCAGTCATGGCTGATCTAAAAACCCATGAGAAACATTGTGGTAAGGATAAATGGCTTTGTTCATGTGGTACAACGTTTTCTAGGAAAGACAAGCTTTTTGGGCACATTGCACTTTTCCAAGGCCATACACCAGCCATTCCCTTGGATGACAACACTAAAGGGGTAGCTGAGCCACCAATTCATCACAGCAAAGAAAACACTAAAGCAGGGAATGTGAACTTCACTTTTGGATCAAATCCTTCAGATGGAAATGAAGTTCAAAATGTGATGGATATAAAAGGCAATAGTGATGACCCTATAAATTATTTCTCATCTTTGAACTTTGAACCCAACTTTGGGGGGTTTAATGAATTCACCAGGCCTCTATTTGATGATTCCGAAGGTTCATTCTCTTTTGTCATGCCTGGATCTTTTAAATCTGGAGGGGAATCAAGTTCTGACAATCTTTTGTAA 1566 0.4266 MDSNGSLRANTWARSPPLTSAASGLSSDPLSFPGFGLQNNQPKWDGPSSSDFGIRVESPFKEFNQPSQNQSPLACNSNNEIEFTDQENRHQSESSQTSRVQDWDPSVMLNNLSFLEEKIHQLRDLVHLIVRQKGVRVGQPNELVTQEQQLITTDLTSIIIQLISTAGSLLPSARSSLINTSPLVAQIDQLQGTSVPSGTGASSSCIQPQNIGGKKVSDQSMQTDLPNNCEMEQNYNMVEHDLKDEEDADDGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPHKESGSPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDNTKGVAEPPIHHSKENTKAGNVNFTFGSNPSDGNEVQNVMDIKGNSDDPINYFSSLNFEPNFGGFNEFTRPLFDDSEGSFSFVMPGSFKSGGESSSDNLL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00940 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 275 302 IPR013087 -
Cca08g00940 521 MobiDBLite consensus disorder prediction 1 51 - -
Cca08g00940 521 Gene3D Classic Zinc Finger 259 325 - -
Cca08g00940 521 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 48 508 IPR044300 GO:0010044|GO:0010447
Cca08g00940 521 SMART c2h2final6 323 356 IPR013087 -
Cca08g00940 521 SMART c2h2final6 361 383 IPR013087 -
Cca08g00940 521 SMART c2h2final6 275 297 IPR013087 -
Cca08g00940 521 MobiDBLite consensus disorder prediction 1 47 - -
Cca08g00940 521 ProSitePatterns Zinc finger C2H2 type domain signature. 277 297 IPR013087 -
Cca08g00940 521 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 48 508 - -
Cca08g00940 521 MobiDBLite consensus disorder prediction 198 219 - -
Cca08g00940 521 SUPERFAMILY beta-beta-alpha zinc fingers 273 301 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00940 Cca-Chr8 22085187 22088001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00940 242 521 C2H2 Transcription Factor Family AT1G34370 67.577 5.74e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca08g00940 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00940 - - gmx:100500526 922.539