Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00937 ATGGAGGATTCAGAGGAGGAGGAGCTTCTGAATCTCACTCTTTCAGTTGCTGCTGGTAGGGAGAGGAAGAAGAAAGGAAGGAAAAGGGATATTAGTAATAATGTTAATTCTATTATTATGAACTCCAATGAAGGCTATGAAGGGAAGATCTTTAGGCTCCTCCAAATGAGGGAGTTGATGCTAAGACAAGACCACAGAAGAAAAGGAGTGGTTGAAGATGGGAATGGCCTTCCTTTGATTCATTTGCTTCTCTCAACTGCAACTTCTGTTGATGAAAGAAGCCTAGGTGCAGCTCTAGAGAGCCTCATTGACTTGTACCAAACGGTTTCCCTAAGAGGTGACTCGGTTCAACGTGTTGTGGCCTATTTTGCTGATGGTTTGGCTGCAAGGCTTCTCACAAAGAAGTCTCCATTCTATGATATGCTCATGGAGGAACCAACATGTGAGGAAGAGTTTCTTGCATTCACTGATCTCTATAGGGTCTCACCCTATTACCAATTTGCTCATTTCACAGCAAATCAGGCTATTTTGGAGGCCTATGAGGAGGAGGAAGAGAGGAACAACAAAGCACTACATGTGATTGACTTTGATGTGTCCTATGGCTTCCAATGGCCTTCTCTCATTCAATCACTTTCTGAAAAGGCAACAAGTGGCAACAGAATATCCCTCAGGATCACAGGTTTTGGTAACAACATGAAGGAGCTGCAAGAAACTGAGGCCAGATTGGTCAGCTTCTCAAAGGGGTTTGGAAACCACCTTGTGTTTGAATTCCAAGGCCTGCTGAGAGGCTCATCAAGGGTCATCAACCTGAGGAAAAGGAAAAATGAAACTGTGGCAGTGAACCTTGTTTCTTATTTGAACACTTTGAGTGGTTCCATGAAGGTTTCTGACACATTGGGATTTGTTCATTCTCTTAGCCCCTCTATTGTGGTTTTGGTGAAACAAGAAGGTAGCAGGAGTCTCAAGACCTTCTTGTCAAGGTTCACCGAGTCCTTGCACTACTTTGCAGCCATGTTTGATTCACTTGATGATTGCTTGCCACTTGAGAGCACTGAGAGGTTGAGGATTGAGAAGAAGCTTTTGGGGAAAGAGATCAAAAGCATGCTCAACTATGACATGGAGGGTGTTGATTGCCCCAAATATGAGAGGATGGAGACATGGAAAGCAAGAATGGAGAATCATGGGTTTGTGGGAAGAAAAATAAGCTCAAAGTGTGTGATCCAAGCAAAGCTTCTTCTGAAGATGAGGACTCATTATTATCCTCTACAGTTTGAGGAAGAGGGTGGTGGGGGTTTCAGAGTTTCTGAAAGGGATGAAGGAAGAGTTATCTCTTTGGGGTGGCAAAATAGGTATCTTCTTAGCGTCTCAGCATGGCAATCACTTTGA 1386 0.4365 MEDSEEEELLNLTLSVAAGRERKKKGRKRDISNNVNSIIMNSNEGYEGKIFRLLQMRELMLRQDHRRKGVVEDGNGLPLIHLLLSTATSVDERSLGAALESLIDLYQTVSLRGDSVQRVVAYFADGLAARLLTKKSPFYDMLMEEPTCEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEEEEERNNKALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGNNMKELQETEARLVSFSKGFGNHLVFEFQGLLRGSSRVINLRKRKNETVAVNLVSYLNTLSGSMKVSDTLGFVHSLSPSIVVLVKQEGSRSLKTFLSRFTESLHYFAAMFDSLDDCLPLESTERLRIEKKLLGKEIKSMLNYDMEGVDCPKYERMETWKARMENHGFVGRKISSKCVIQAKLLLKMRTHYYPLQFEEEGGGGFRVSERDEGRVISLGWQNRYLLSVSAWQSL 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00937 461 ProSiteProfiles GRAS family profile. 70 459 IPR005202 -
Cca08g00937 461 PANTHER OSJNBA0084A10.13 PROTEIN 8 459 - -
Cca08g00937 461 Pfam GRAS domain family 79 459 IPR005202 -
Cca08g00937 461 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 459 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00937 Cca-Chr8 22061582 22063397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00937 75 459 GRAS Transcription Factor Family AT1G14920 34.663 4.76e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca08g00937 GRAS 1.2e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00937 - - gmx:100798251 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00937 08 22061582 22063397 Cca02g02065 02 40745488 40747195 PCT