Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00925 atgtggttacggaccgttctgctgggtttgagaacgggccgttttggtttgggaTCTTTGGGGGAGACTGTGAGGGAAAAGAGGTCCAGGGTGCCTGCTTGGGTTGTGGTGGTTGTTGTTTTGGGTACAATTTTGGGTTTGATTGCCTTGGAAGGTGGTTTGTGGGTGTGGTGTTGTAGGAACAGTGCGAGGTTTGGAGGGTTGTCTACTCATTATGCGCTTCTTGAGTATGCTTCTGGTGCGCCAGTGCAGTTTTCGTACAAGGAGCTGCAACAAGCTACAAAGGGGTTCAAGGAGAAGCTTGGAGCTGGGGGATTTGGAATTTCAGCGTGTAGAGGGAATTGTCTTTCGGGTACTGGAGCCTGTTACGCTTCTACCTCCTTGTCGGATGGATCGGGGCAATGTGTGATGAAATCAGAAGATTTTGTTAGTGGTTATTATAGTCCTTCACTGCCTAGCACTTCTTATATCAAGGTTTGTCCACCGTTGGCACCGAATCCACCGCCCTCTTTGGGGGAGACTGTGAGGGAAAAGAGGTCCAGGGTGCCTGCTTGGGTTGTGGTGGTTGTTGTTTTGGGTACAATTTTGGGTTTGATTGCCTTGGAAGGTGGTTTGTGGGTGTGGTGTTGTAGGAACAGTGCGAGGTTTGGAGGGTTGTCTACTCATTATGCGCTTCTTGAGTATGCTTCTGGTGCGCCAGTGCAGTTTTCGTACAAGGAGCTGCAACAAGCTACAAAGGGGTTCAAGGAGAAGCTTGGAGCTGGGGGATTTGGTTCTGTGTATAGAGGAACTCTTGTTAACAAAACTGTTGTTGCTGTGAAGCAACTTGAGGGCATTGAGCAAGGTGAGAAGCAGTTTAGGATGGAAGTTGCCACTATTAGTAGCACTCATCATCTCAATTTGGTGAGGCTTATTGGATTTTGCTCAGAAGGGCGCCACCGGCTTTTGGTTTATGAGTTTATGAAAAACGGGTCTCTTGATGATCTTATACTCCTAACAGAACATCATTCTGAAAAATTGTTGAGTTGGGAGCATCGATACAACATTGCCCTGGGAACTGCAAGAGGCATCACATACCTACATGAGGAGTGTCGTGATTGCATAGTCCATTGTGACATAAAACCAGAAAACATTCTCTTGGATGAGAACTATGTTTCCAAAGTCTCAGATTTTGGTCTTGCAAAGCTCATTAGTCCCAAAGAAGTCCTAAGTTAG 1215 0.4444 MWLRTVLLGLRTGRFGLGSLGETVREKRSRVPAWVVVVVVLGTILGLIALEGGLWVWCCRNSARFGGLSTHYALLEYASGAPVQFSYKELQQATKGFKEKLGAGGFGISACRGNCLSGTGACYASTSLSDGSGQCVMKSEDFVSGYYSPSLPSTSYIKVCPPLAPNPPPSLGETVREKRSRVPAWVVVVVVLGTILGLIALEGGLWVWCCRNSARFGGLSTHYALLEYASGAPVQFSYKELQQATKGFKEKLGAGGFGSVYRGTLVNKTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDDLILLTEHHSEKLLSWEHRYNIALGTARGITYLHEECRDCIVHCDIKPENILLDENYVSKVSDFGLAKLISPKEVLS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00925 404 ProSiteProfiles Protein kinase domain profile. 246 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00925 404 Pfam Protein kinase domain 249 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00925 404 PANTHER OS07G0415500 PROTEIN 25 107 - -
Cca08g00925 404 PANTHER OS07G0415500 PROTEIN 107 400 - -
Cca08g00925 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 368 380 IPR008271 GO:0004672|GO:0006468
Cca08g00925 404 SUPERFAMILY Protein kinase-like (PK-like) 228 401 IPR011009 -
Cca08g00925 404 SMART serkin_6 246 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00925 404 PANTHER OS07G0415500 PROTEIN 107 400 - -
Cca08g00925 404 Gene3D Transferase(Phosphotransferase) domain 1 321 403 - -
Cca08g00925 404 Gene3D Phosphorylase Kinase; domain 1 219 320 - -
Cca08g00925 404 ProSitePatterns Protein kinases ATP-binding region signature. 252 274 IPR017441 GO:0005524
Cca08g00925 404 PANTHER OS07G0415500 PROTEIN 25 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00925 Cca-Chr8 21320547 21322456 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00925 219 401 Receptor kinase-like Gene Family AT5G20050 46.316 9.69e-52 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca08g00925 Pkinase 7.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00925 - - ccaj:109816085 592.038