Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00921 ATGAAATCCGGGAGTTGTTCTACATTGGTTTTGCTTATGACCGATGTAGAAATGAGTCCCTCGTATTCTCGCGCAGGGTGCACACTACCCCCAACCTCCGAAATTCATCTTCTCTCTTCCGCCCCCAACCCCCTTCTCCCTCCAAACAAACCCCTTGGCAAGGAGATCGTAGATTTGTGCCTCGATCGCGCCCGCAAGCTCGCCGACAACTGCACCGGCCTCCAAGGCTTCCTCGTCTTCAACGTCGTGGGTGGcggcaccggctccggcctaggctccctcctgctcGAGCGTCTCTCCGTGGATTACGGTAAAAAATCCAAAATGGGCTTCACCATTTACCCTTCCCCTCAGGTCTCAACTGTCATGGTGGAACCCTACAACAACGTCCTAATTAACCTTGGTAAGACATGGGAGAAGCTTCAACTTGCTGCTAGGGTTATTGTTGCAATTGAAAATCCTCAAGATATCATTGTTCAATCGGCGAGGGCTTATGGTCAGAGGGCGGTTCTGAAATTTGCTCAGTACACCGGTGCTCATGCCATTGCTGGAAGGATGTTCTGTGCTTTGTTAGTGGACTTGTTCTTCTATAGAGAACCAGAGGAGGCGAAGCAACAAAAAGAGGAGGAAGCTGTAGCAGGTGATTATGCCATCACGGACTTCAATGCTGGTGTTATTGCTGCTGATGGGCAATGGCCTGGTGTAATTGATCAAACATGA 720 0.4708 MKSGSCSTLVLLMTDVEMSPSYSRAGCTLPPTSEIHLLSSAPNPLLPPNKPLGKEIVDLCLDRARKLADNCTGLQGFLVFNVVGGGTGSGLGSLLLERLSVDYGKKSKMGFTIYPSPQVSTVMVEPYNNVLINLGKTWEKLQLAARVIVAIENPQDIIVQSARAYGQRAVLKFAQYTGAHAIAGRMFCALLVDLFFYREPEEAKQQKEEEAVAGDYAITDFNAGVIAADGQWPGVIDQT 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00921 239 PRINTS Alpha-tubulin signature 62 70 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g00921 239 PRINTS Alpha-tubulin signature 90 102 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g00921 239 PRINTS Alpha-tubulin signature 103 114 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g00921 239 Pfam Tubulin/FtsZ family, GTPase domain 49 131 IPR003008 GO:0005525
Cca08g00921 239 PANTHER TUBULIN ALPHA-1 CHAIN 51 132 - -
Cca08g00921 239 SUPERFAMILY Tubulin nucleotide-binding domain-like 30 131 IPR036525 -
Cca08g00921 239 PANTHER TUBULIN 51 132 IPR000217 GO:0005874|GO:0007017
Cca08g00921 239 SUPERFAMILY Ribosomal protein S2 128 190 IPR023591 -
Cca08g00921 239 PRINTS Tubulin signature 76 94 IPR000217 GO:0005874|GO:0007017
Cca08g00921 239 PRINTS Tubulin signature 95 116 IPR000217 GO:0005874|GO:0007017
Cca08g00921 239 PRINTS Tubulin signature 120 133 IPR000217 GO:0005874|GO:0007017
Cca08g00921 239 PRINTS Tubulin signature 50 74 IPR000217 GO:0005874|GO:0007017
Cca08g00921 239 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 84 90 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cca08g00921 239 Gene3D Tubulin/FtsZ, GTPase domain 29 175 IPR036525 -
Cca08g00921 239 SMART Tubulin_4 14 178 IPR003008 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00921 Cca-Chr8 21043659 21044765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00921 131 185 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 90.909 2.25e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00921 K07374 - zju:107410151 136.732