Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00920 ATGTTCCTCAAAACCCATTTTCTGCTCCTGGCTCTTGTTTTAGCAACCACAACGGTTACTACCGGCATAACCCCAGGTAACACTCTCTTCACCAACCACATGTGGTCTTCTCCCAACGCCACCTTCTCTCTTGCTTTCGTCCCCGTTCAGCCACCGACCACCCCTCCTTCCTTCACCGCCGCAATCGTCTTCTCCGGCGGCGCCCCCGTCGTCTGGTCTGCTGGCAACGGCGCTGCCGTGGACTCCGGCGGCTCCCTCCAGTTCCTCCGCAACGGCGCCCTCCGCCTCGTCAACGGCTCCGGCGCCACCGTGTGGGACTCTGGCACGGCGGGCCGCGGCGCCACCTCAGCAACCCTTGAAGAGAGTGGCAATTTGGTAATTTGGAAGGGCACGGGTACCCTCTGGTCAAGCTTTGACCATCCCACCGATACCCTTTTGCCTTCTCAGAATTTCACTGTTGGTAAGTCTCTCACATCCCAAAGTTACTCTTTTAGTCTTCTTGCAAATGGGAATTTGATCCTCAGGTGGAACAATAGCATAGTGTACTGGACCCAGGATTTGAACTCTTCTCTGAATGTGAGTTTGGATTCACCTGTGTTGGCGTTGTCATCGATTGGCCTTTTGCAAATTTCCGATACCAAATTGAACACTCCTGTTGTTATTGCTTATAGTAGTGACTATGCTGAGGAGAATATTGATGTGTTGAGGGTGTTGAAGTTGGATAATGATGGCAATTTGAGGATTTATGGTACCAATAAGGGTAGTATTAGATGGACTGCTGTGCTTGATCAGTGTAAGATTTATGCTTACTGTGGGAACTATGGTGTGTGTAGTTACAATGGTTCGAGCCCGAGTTGCGGGTGCCCTTCAGAGAATTTCGAAATGGTTGATCCAAATGATGCTAGAAAAGGGTGCAGGAGGAAGGTGAGTCTCAACAATTGTCAAGGGAGTCTATTGACCTTGGAGCACACCATGATCTTGACTTACTTCCTTGACCCTGCGTCGCGGACGCTTTCCCAAGATTTATGTAGGACAACTTGTCTTTCAAATGCTGGAGCCTGTTTTGCTTCTACTTTCTTGTCGGAAGGCTCGGGGCACTGTGTGATTAAATCAGAAGATTTTGTTAGTGCATATCAGAGTTATTTACTGCCTAGCACTTCTTATGTCAAGGTTTGTCAGTCGCCGGCACCAAATCCGCTACGTGTGAGGGAAAAGAGGTCCAACGTGCCTGCTTGGGTTGTGGTGGTGGTTGTTTTCAGTACTCTTTTGGGTTTGGTTGCCTTGGAAGGTGGTTTGTGGATGTGGTGTTGTAGGAACAAGACAAGGTTTGGTGGTTTGCCTGCTCACTATGCACACCTTGAGTATGCTTCTGGTGCGCCAATCCAGTTTTCTTACAAGGAGCTCCACAAGGCAACAAAGGGGTTTGAGGAAAAGCTTGGAGCTAGTGGATTTGGTTCTGTGTATAGAGGAACTCTCGTTAACAAAACTGTTGTTGCTGTGAAGCAACTTGAGGGCATTAAGCAAGGTGAGAAGCAGTTTAAGATGGAAGTTGCCACTATAAGTAGTACTCATCATCTCAATTTGATGAGACTCATTGGCTTTTGCTCTGAAGGGCGCCACCGGCTTCTAGTTTATGAGTTCATGAAAAATGGGTCTCTTGGTGATTTTTTATCCCAAAGAGAACAACATTCAGAAAAAATGTTGAATTGGGGGTATCGATACAACATTGCATTGGGCACTGCAAGAGGCATCACATACTTGCACGAGGAGTGTCGTGACTGTATAGTCCATTGTGACATAAAACCTGAAAACATTCTATTGGATGAGAACTATGTTGTCAAAGTCTCTGATTTGGGTCTTGCAAAGCTCATTAGTCCCAAGGACCTTAAACATCGGACCTTGACAAATGTGAGAGGAACCCGAGGTTATTTAGCCCCTGAGTGGCTTGTGAATCTTCCCCTAACATCCAAATCTGATGTTTATAGCTATGGCATGGTCCTGTTAGAGATTGTGAGTGGGAGGAGGAGTTTTGAATTATCAGAGGAAACAAATAGAAAGAAGTTTTCTATTTGGGCTTATGAAGAGTATGAGAGAGGTAACATTAGTGGAATTTTGGACAAAAGACTAGTTGACCAAGAAGTTAATATGGAACAAGTAAGAAGAGCAATTCAAGCAAGCTTTTGGTGCATCCAAGAGCAACCGTCTCAGAGACCAATAATGAGTAAAGTGTTGCAAATGCTAGAAGGGGTAATAGAGATTGAAAAGCCACCTGCCCCAAAATCAATGATGGAAGGAGCTGTTAGTGGAACCAGCTCATACTCGAGTAGCAATGCTAGTGCATTCTCCGTAGTTGGAGTTTCACCCCCTGGTCCCTCTTCTTCATCTTCATTTCTGACTAGTGATGTTTCAACCTTCACCTCAAGAATGAACACTGAGAAGCCAACCTCATCTCTTTTACAATCAGACCCTGATAGAAACATCCAACATATATAA 2493 0.4601 MFLKTHFLLLALVLATTTVTTGITPGNTLFTNHMWSSPNATFSLAFVPVQPPTTPPSFTAAIVFSGGAPVVWSAGNGAAVDSGGSLQFLRNGALRLVNGSGATVWDSGTAGRGATSATLEESGNLVIWKGTGTLWSSFDHPTDTLLPSQNFTVGKSLTSQSYSFSLLANGNLILRWNNSIVYWTQDLNSSLNVSLDSPVLALSSIGLLQISDTKLNTPVVIAYSSDYAEENIDVLRVLKLDNDGNLRIYGTNKGSIRWTAVLDQCKIYAYCGNYGVCSYNGSSPSCGCPSENFEMVDPNDARKGCRRKVSLNNCQGSLLTLEHTMILTYFLDPASRTLSQDLCRTTCLSNAGACFASTFLSEGSGHCVIKSEDFVSAYQSYLLPSTSYVKVCQSPAPNPLRVREKRSNVPAWVVVVVVFSTLLGLVALEGGLWMWCCRNKTRFGGLPAHYAHLEYASGAPIQFSYKELHKATKGFEEKLGASGFGSVYRGTLVNKTVVAVKQLEGIKQGEKQFKMEVATISSTHHLNLMRLIGFCSEGRHRLLVYEFMKNGSLGDFLSQREQHSEKMLNWGYRYNIALGTARGITYLHEECRDCIVHCDIKPENILLDENYVVKVSDLGLAKLISPKDLKHRTLTNVRGTRGYLAPEWLVNLPLTSKSDVYSYGMVLLEIVSGRRSFELSEETNRKKFSIWAYEEYERGNISGILDKRLVDQEVNMEQVRRAIQASFWCIQEQPSQRPIMSKVLQMLEGVIEIEKPPAPKSMMEGAVSGTSSYSSSNASAFSVVGVSPPGPSSSSSFLTSDVSTFTSRMNTEKPTSSLLQSDPDRNIQHI 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00920 830 SMART serkin_6 473 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00920 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 595 607 IPR008271 GO:0004672|GO:0006468
Cca08g00920 830 ProSiteProfiles Bulb-type lectin domain profile. 20 140 IPR001480 -
Cca08g00920 830 Gene3D - 15 139 IPR036426 -
Cca08g00920 830 Gene3D Phosphorylase Kinase; domain 1 447 547 - -
Cca08g00920 830 CDD STKc_IRAK 479 749 - -
Cca08g00920 830 SUPERFAMILY Protein kinase-like (PK-like) 455 748 IPR011009 -
Cca08g00920 830 ProSiteProfiles PAN/Apple domain profile. 314 392 IPR003609 -
Cca08g00920 830 ProSiteProfiles Protein kinase domain profile. 473 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00920 830 Gene3D Transferase(Phosphotransferase) domain 1 548 762 - -
Cca08g00920 830 PIRSF SRK 1 807 IPR024171 GO:0004674
Cca08g00920 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 185 IPR036426 -
Cca08g00920 830 Pfam Protein kinase domain 476 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00920 830 MobiDBLite consensus disorder prediction 806 830 - -
Cca08g00920 830 Gene3D - 140 260 IPR036426 -
Cca08g00920 830 ProSiteProfiles Bulb-type lectin domain profile. 142 261 IPR001480 -
Cca08g00920 830 Pfam D-mannose binding lectin 70 160 IPR001480 -
Cca08g00920 830 PANTHER G-TYPE LECTIN S-RECEPTOR SERINE/THREONINE-PROTEIN KINASE 7 815 - -
Cca08g00920 830 PANTHER OS07G0415500 PROTEIN 7 815 - -
Cca08g00920 830 SMART blect_4 26 141 IPR001480 -
Cca08g00920 830 Pfam S-locus glycoprotein domain 227 289 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00920 Cca-Chr8 21010012 21012504 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00920 446 757 Receptor kinase-like Gene Family AT5G20050 41.231 5.25e-74 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca08g00920 Pkinase 7.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00920 - - gmx:100795819 1213.75