Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00902 ATGTCTTCTGTTTCCTTTAGCTATGGCTggaactatgatgtgttcctcagcttcagaggttctgatactcgccatggctttaccggtcatctctataaagctctatgcgatagaggaatccacactttcattgatgatgaggagcttcaaagaggcgaagagatcacaccatcactgctcaaggcaattcaagagtctaggattgccattcccgtcttctctaagaactatgcttcttccacgttttgcttagacgaacttgtcagcatccttgcatgctttaaggaaaagggtcgcttggttttaccagttttctatgatgttgacccttctcatgtgagacatcagataggtaactatgaagaagcactgaatagccataaggagaggtttaatgaccaagagaaactgcaaaagtggaagattgctctgcgtcaagtagctgatttgtctggttatcatttcaaacatggGGGTGAAAATGAGTATGAATTTATTGGGAAGATTGTTATAGAGGTATCACAAAAAATTAATCGCACTCTTTTGCATGTTGCGGATTATCCGGTTGGATTAGAGTCTCCATTGCTACAAGTAAATTCGCTTTTGAATATTGAATCTGGTGGAGTCCATGTGGtaggtatctacggaattggaggagtaggcaaaacaacgattgctcgagcaatttataatttgattgctgatcaatttgaagggttgtgttttcttgataatgttagagaaacttcaattaaacatggattggtgcatctccaagaggcaattctttctaaatcaattggagaggatggtattaagttaggaagtgtaaatgaaggaattccaataataaagcataggctccacttaaagaaggttcttttggttcttgatgatgttgacaaactagatcagttgcaggcaacggttggagggacagattggtttggttccggtagcagaatcattattactactcgagacaggcatttactaaaaagccatggggttgaaaagacatatgaggtagatatgttaaataagaaagacgcttttaaattgctcagttggagtgcttttaaaactgacaaagttgattcatgttaccagaacattttaaaccgtgtagtaacttttacttctggccttccattggctttggaagtaataggttcaaacttgtttggaaaaaggatagaagaatgggaatctgctttagatcggtatgaaagaattcccaataaaaagattcaagatatacttagagtaagttttgattctttagaagaagatgagcaggacatttttcttgatattgcttgttgctttaaaggatatgctttgacatatgtaaaagaaatactttctaatcatcacggtttccgcccagaatatggtataggagtgttgattgacaaatctctcgtaaaaattgatgcatgtggttgtgtgacattgcatgacttgatagaggacatgggtaaagaaattgtacgaaaggaatcgcctgaagagcctggaaaacgcagtaggttatgGTGTCCTGAAGATATAGTTGAAGTCTTAGAAGAAAATAAGGGAACTAAAAGAATTCAAATCATAAATCTGGATTACCTCAAATATGAAGTAGAATGGAATGGAATGGGCTTCAAGGAGATGACTAACCTCAAAACACTTATTATTAGAGATGCTATCTTTACCAATGGTCCGAAACATCTTCCAAATAGTTTAAGAGTATTAGAATGGTGGAGATATCCTTCATCGTCTTTGCCATTCGAGTTTCATCCAAAGAAACTTGTCATTTTACGGTTACCATATAGTTGCTTTTGCTCAAGGTCTCTTGATTTGTTCATGTCGAAGAAGATTTTTGTGAAGATGAGAGTTTTGAATTTTAACAGTTGTGAATATATAACAGAGATACCCGACGTAGGTGGTGTCCCAAATTTACAAGAATTATCATTTCGCTACTGTAAGAATTTAATTAAAATTCATGGATTAGTTGGATTCTTGGCTAATCTTAAAATATTGGATGCTGATGGTTGTAGCAAGCTTAGGAGTTTTCCGCCTATCAAATTGACCTCCCTCGAAAATCTCCGGCTTTCATATTGTCCTAATCTTGAGAATTTTCCAAACATATTAGGAAAGATGGAAAATGTAACTTTCCTTTATATTTCAGGCACTCCCATAAAAGAACTTCCATTTTCATTTAAAAATCTCACTAGACTTCGAAGATTTAAACTGGAGGATTGTGGAATTATTCAGTTTCCAAGTAGCATTTTTGTGATGCAAAAACTTCGTTATTTGGTTGTTAGCAAATGTGAGGGGTTGCTACTACCCAAAGAGAACAAAGATCTAGATCTTACTCAACCTCCTGCATCCACCCAAGAATGTCACCTTTTGAAAGAACTTTATTTGTGTGGTTGTGAGAATCTTCAAGATATAAAAGGGATTCCATCCAACATTTTAGCAATTTCTGCATCAAACTGTCAATCCTTGACTGCCAAGTGTAGAAGCCTGTTATTGAGTAAGGAATTGCATGAGGCCGGTGTACGCAAATATTTTATTTTTCCTGGAACGAAGATTCCAGAGTGGTTTGAGCATTGTATCAATGGATCGTCAATTTCTTTCTGGTTTCGCAACAAGTTCCCTGCAATATCCCTCTGTGTTGTTGCTGGATCCAAAAAATATTCGAGCATTATTCCCATATTTACCATTAATGGCAGGAGAAATTTATCAAAAAGGAGGTGGGTCCATTTGTACCAAATGGATGATCATGTGGTTATTTTTGATGAAATGGAGAAACCAGTCCACATGGATGGAGTTCTTTTAGAAAATGAATGGAATCATGTGGTATGTACTGTATCACATAGTGATTCTTCTAACCCATGTGAAGTGTTTATCAAACAAATTGGAATCTATGTATTCAAACAAGGAAGCAACATGGATGACATCCAATTCACCCAACCATTATGA 2973 0.1968 MSSVSFSYGWNYDVFLSFRGSDTRHGFTGHLYKALCDRGIHTFIDDEELQRGEEITPSLLKAIQESRIAIPVFSKNYASSTFCLDELVSILACFKEKGRLVLPVFYDVDPSHVRHQIGNYEEALNSHKERFNDQEKLQKWKIALRQVADLSGYHFKHGGENEYEFIGKIVIEVSQKINRTLLHVADYPVGLESPLLQVNSLLNIESGGVHVVGIYGIGGVGKTTIARAIYNLIADQFEGLCFLDNVRETSIKHGLVHLQEAILSKSIGEDGIKLGSVNEGIPIIKHRLHLKKVLLVLDDVDKLDQLQATVGGTDWFGSGSRIIITTRDRHLLKSHGVEKTYEVDMLNKKDAFKLLSWSAFKTDKVDSCYQNILNRVVTFTSGLPLALEVIGSNLFGKRIEEWESALDRYERIPNKKIQDILRVSFDSLEEDEQDIFLDIACCFKGYALTYVKEILSNHHGFRPEYGIGVLIDKSLVKIDACGCVTLHDLIEDMGKEIVRKESPEEPGKRSRLWCPEDIVEVLEENKGTKRIQIINLDYLKYEVEWNGMGFKEMTNLKTLIIRDAIFTNGPKHLPNSLRVLEWWRYPSSSLPFEFHPKKLVILRLPYSCFCSRSLDLFMSKKIFVKMRVLNFNSCEYITEIPDVGGVPNLQELSFRYCKNLIKIHGLVGFLANLKILDADGCSKLRSFPPIKLTSLENLRLSYCPNLENFPNILGKMENVTFLYISGTPIKELPFSFKNLTRLRRFKLEDCGIIQFPSSIFVMQKLRYLVVSKCEGLLLPKENKDLDLTQPPASTQECHLLKELYLCGCENLQDIKGIPSNILAISASNCQSLTAKCRSLLLSKELHEAGVRKYFIFPGTKIPEWFEHCINGSSISFWFRNKFPAISLCVVAGSKKYSSIIPIFTINGRRNLSKRRWVHLYQMDDHVVIFDEMEKPVHMDGVLLENEWNHVVCTVSHSDSSNPCEVFIKQIGIYVFKQGSNMDDIQFTQPL 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00902 990 Pfam NB-ARC domain 201 418 IPR002182 GO:0043531
Cca08g00902 990 Pfam TIR domain 11 180 IPR000157 GO:0007165
Cca08g00902 990 PANTHER ARCHAEAL ATPASE 22 954 - -
Cca08g00902 990 SMART AAA_5 208 346 IPR003593 -
Cca08g00902 990 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 153 IPR035897 -
Cca08g00902 990 Gene3D - 180 340 IPR027417 -
Cca08g00902 990 Gene3D Ribonuclease Inhibitor 713 843 IPR032675 -
Cca08g00902 990 Gene3D - 8 179 IPR035897 -
Cca08g00902 990 ProSiteProfiles TIR domain profile. 10 177 IPR000157 GO:0007165
Cca08g00902 990 Gene3D - 345 429 IPR042197 -
Cca08g00902 990 SUPERFAMILY L domain-like 547 845 - -
Cca08g00902 990 PRINTS Disease resistance protein signature 287 301 - -
Cca08g00902 990 PRINTS Disease resistance protein signature 668 684 - -
Cca08g00902 990 PRINTS Disease resistance protein signature 380 394 - -
Cca08g00902 990 PRINTS Disease resistance protein signature 211 226 - -
Cca08g00902 990 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 954 IPR044974 GO:0006952
Cca08g00902 990 Gene3D Ribonuclease Inhibitor 526 712 IPR032675 -
Cca08g00902 990 SMART till_3 11 150 IPR000157 GO:0007165
Cca08g00902 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 439 IPR027417 -
Cca08g00902 990 Coils Coil 117 137 - -
Cca08g00902 990 SUPERFAMILY "Winged helix" DNA-binding domain 415 523 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00902 Cca-Chr8 20454141 20473666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00902 6 826 WRKY Transcription Factor Family AT4G12020 30.430 3.81e-90 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00902 - - gmx:121173697 1187.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00902 08 20454141 20473666 Cca08g00902 08 20454141 20473666 ECH