Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00900 ATGGATTTCAGTGAGGGTTATGTATCAAATGAACATCGAGAGCTTCATCGATCTGCAACAGAAAGTGCAGATCCATTATCTGTTAGTCCATTGCAACTTTCTACCAAGTCAACAAGATCTCCTAAATCTCCAAGGTCCCCTAAATCTCCCAGGTCTCCAAAATCTCCAAGGTCCCCAAAGGTGCAAGGTGGTTCTGGGGGAAAAGGTACTTGGGGTGGATTGCTTGATACAGATGACTCGAATGTTCTTGATCCTAATGATCCAAACTATGACAGCACTGAGGAATATGACCATTCAAATGAAAAGAAACCGACAACAGAACTCGAGGACTACAAGAAAAAAGCTATAGTAATAGTGGAGGAATACTTTGCCACTGATGATGTTGTTGCAACAATGAATGAAGTTAAAGAATTGGGAAAACCAGAGTATGGCTACTATTTTGTCAAAAAACTTGTCTCTATGTCCATGGACAGACATGACAAAGAAAAAGAAATGGCTGCTATTCTGTTATCTGCACTTTATGCTGACATATTTGATCCTTCACAAGTTTACAAAGGTTTCGGCAAATTAGTTGAATCAGCAGATGACTTGATTGTAGATATACCAGATACAGTTGAAGTTCTAGCACTTTTCATAGCCCGAGCCGTGGTTGATGACATTCTTCCTCCAGCATTTTTGAAGAAACAAATGGCCCATTTACCCAAAGATTCAAAAGGGGTTGAGGTCTTGAAAAAAACTGAGAAAAGCTATCTAGCAGCCCCTCTTCATGCAGAAATCATAGAGAGATGCTGGGGAGGTAGTAAGAATACCACAGTTGATGATGTTAAAGCTAAGATAAACAATTTTTTGAAGGAGTATGTTGTAAGTGGTGACAAGAAAGAAGCCTTCAGATGCATCAAAGATCTCAAAGTTCCTTTCTTCCATCACGAAATAGTGAAACGGGCTCTTATAATGGCAATGGAGAGACGTCAAGCAGAACCTCCACTGTTGGACCTGTTGAAAGAGGCTGCCGAAGAAGGTTTCATCAACTCTAGCCAAATGTCTAAAGGGTTCGATAGGTTGATTGACACAGTTGATGACTTATCACTTGACATACCAAATGCACGTGGAATACTGCAGCAACTAATGTCTAAAGCAGCATCTGAAGGTTGGTTATGTGTTTCATCCTTGAAATCACTCTCAGTTGAGCCTGAAAGGAACACAATAGAAGATAGTGCTGCCAAAAATTTCAAGGTAAAGACTCAGTCCATCATCAAAGAGTACTTCTTATCAGGTGATATATTGGAGGTAAATAGCTGTCTAGAGCAAGAAAACAGCAACAACTGTGCTGCACTTAATGCAATCTTTGTCAAAAAACTGATAACTCTTGCAATGGATAGGAAGAATCGGGAAAAGGAAATGGCTTCTGTGTTGCTGTCATCTCTGTGTTTCCCATCTGATGATGTTGTGAGTGGTTTTGTGATGTTGATAGAGTCGGCTGATGACACTGCTCTGGACAATCCGGTTGTTGTTGAGGATCTTGCAATGTTTCTAGCTAGAGCAGTAGTGGATGAAGTCCTAGCCCCACAACACCTTGAAGAGATTGGAACACAATGTTTGGGGCCAGACTCAGTTGGGAGCAAAGTTCTTCAAATGACAAAGTCATTGCTAAAGGCTAGACTCGCTGGCGAGCGAATCTTGAGGTGTTGGGGTGGTGGGGGCAGTAGCAAGCCTGGATGGGCGGTTGAGGATGTCAAGGACATGATTGGGAAGCTCTTGGAGGAGTATGAATCCGGTGGCGACATAAGAGAGGCATGTCGCTGCATGAAAGAGTTAGGAATGCCATTTTTCCACCATGAGGTTGTTAAGAAGGCTTTGGTAACAATCATTGAGAAGAAGAATGAGAGGCTATGGGGTCTACTCAAGGAGTGCTATGAATCAGGACTAATAACCATGAACCAAATGGTGAAGGGTTTTCAAAGGGTTGCCGAATCTCTTGATGACTTGGCCTTGGATGTCCCTGATGCTAAGACTCAGTTTGCGTGCTATGTTGAAAGAGCAAAGGCTAAAGGATGGTTGGACAGTTCATTTTGTTTCAACAAACAGGAACAAGCAACAGAGAATGGCACTCACTAA 2115 0.4208 MDFSEGYVSNEHRELHRSATESADPLSVSPLQLSTKSTRSPKSPRSPKSPRSPKSPRSPKVQGGSGGKGTWGGLLDTDDSNVLDPNDPNYDSTEEYDHSNEKKPTTELEDYKKKAIVIVEEYFATDDVVATMNEVKELGKPEYGYYFVKKLVSMSMDRHDKEKEMAAILLSALYADIFDPSQVYKGFGKLVESADDLIVDIPDTVEVLALFIARAVVDDILPPAFLKKQMAHLPKDSKGVEVLKKTEKSYLAAPLHAEIIERCWGGSKNTTVDDVKAKINNFLKEYVVSGDKKEAFRCIKDLKVPFFHHEIVKRALIMAMERRQAEPPLLDLLKEAAEEGFINSSQMSKGFDRLIDTVDDLSLDIPNARGILQQLMSKAASEGWLCVSSLKSLSVEPERNTIEDSAAKNFKVKTQSIIKEYFLSGDILEVNSCLEQENSNNCAALNAIFVKKLITLAMDRKNREKEMASVLLSSLCFPSDDVVSGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGTQCLGPDSVGSKVLQMTKSLLKARLAGERILRCWGGGGSSKPGWAVEDVKDMIGKLLEEYESGGDIREACRCMKELGMPFFHHEVVKKALVTIIEKKNERLWGLLKECYESGLITMNQMVKGFQRVAESLDDLALDVPDAKTQFACYVERAKAKGWLDSSFCFNKQEQATENGTH 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00900 704 SUPERFAMILY ARM repeat 271 391 IPR016024 -
Cca08g00900 704 MobiDBLite consensus disorder prediction 1 20 - -
Cca08g00900 704 ProSiteProfiles MI domain profile. 577 696 IPR003891 -
Cca08g00900 704 MobiDBLite consensus disorder prediction 1 107 - -
Cca08g00900 704 MobiDBLite consensus disorder prediction 22 45 - -
Cca08g00900 704 PANTHER MA3 DOMAIN-CONTAINING PROTEIN 1 697 - -
Cca08g00900 704 SMART ma3_7 275 386 IPR003891 -
Cca08g00900 704 SMART ma3_7 111 222 IPR003891 -
Cca08g00900 704 SMART ma3_7 410 521 IPR003891 -
Cca08g00900 704 SMART ma3_7 578 687 IPR003891 -
Cca08g00900 704 Gene3D - 260 393 - -
Cca08g00900 704 Gene3D - 561 694 - -
Cca08g00900 704 MobiDBLite consensus disorder prediction 91 107 - -
Cca08g00900 704 Pfam MA3 domain 276 385 IPR003891 -
Cca08g00900 704 Pfam MA3 domain 579 687 IPR003891 -
Cca08g00900 704 Pfam MA3 domain 411 520 IPR003891 -
Cca08g00900 704 Pfam MA3 domain 112 222 IPR003891 -
Cca08g00900 704 SUPERFAMILY ARM repeat 407 567 IPR016024 -
Cca08g00900 704 SUPERFAMILY ARM repeat 574 693 IPR016024 -
Cca08g00900 704 PANTHER PROGRAMMED CELL DEATH 4 1 697 IPR039778 GO:0045892
Cca08g00900 704 ProSiteProfiles MI domain profile. 409 530 IPR003891 -
Cca08g00900 704 ProSiteProfiles MI domain profile. 110 231 IPR003891 -
Cca08g00900 704 ProSiteProfiles MI domain profile. 274 395 IPR003891 -
Cca08g00900 704 Gene3D - 398 553 - -
Cca08g00900 704 Gene3D - 97 249 - -
Cca08g00900 704 SUPERFAMILY ARM repeat 104 268 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00900 Cca-Chr8 20373554 20378858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00900 569 687 Eukaryotic Initiation Factors Gene Family AT5G57870 30.328 4.02e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00900 - - gmx:102668745 1242.64