Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00898 ATGATTCTGGTTAGTACGAGGCCTAAGCGCCGCGATTCAACAAACCCAAACACGCCAACAAACCACGCTTCAACCGTATATAAACTCCCCTTCCCTCTCTCACTCCCAACACACACACAACACATCACAACTCCTTCCATTGTTCCCTTCTTCAAAGACAGAAGAGGGAAACAACCCCAAACATATCAAAAAAACCAAAAAAAATCCCCAATTTTCTTTTCGGAAAAACAAATGGCGGCGGCGATTTCTGCTCCGACGACGGCGCTTCCCGTGGCGGCATTGAACACTGCGCAATTCGGTAACGCTTCGCTGTACGTGGGGGATCTTGAGGGAAACGTGAACGAGGGGCAATTGTATGATCTTTTCAGCCAAGTGGCGCAGGTGCTTTCCATTAGGGTTTGCAGGGATCAGACGAGGCGATCCTCTCTCGGTTACGCTTATGTCAACTTTTCCAACCCTCAAGATGCTGCTAATGCTATGGAACATCTGAACTACACTCCTCTGAATGGGAAACCCATTCGTATTATGTTTTCTCATCGAGATCCTAGCATCCGAAAAAGTGGATATGCAAATGTGTTTATTAAAAATCTGGATACCTCAATTGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGATCTGTTCTTTCTAGTAAGGTAGCTGTTGATGGCATCACTGGTCAATCGAAAGGGTATGGATTTGTGCAGTTTGACAATGAAGAGTCTGCACAAAATGCTATCAAACAGTTAAATGGTATGTTGATAAATGATAAGAAAGTCTATGTTGGACTCTTTGTTCGGCGCCAGGAAAGAGCTGAAGCAAATGGATCACCAAAATTCACCAATGTGTATGTGAAAAACATCTCTGAAACATACACTGATGAAGACCTTAAGAAGCTGTTTTCCCCCTATGGTACAATAACTAGTGCTGTAATTATGACAGAACCCAATGGAAAATCCAAATGTTTTGGTTTTGTGAACTTCGAAAGTCCAGATTCAGCCGCTGCTGCAGTTGACAGGTTAAATGGTTCCATAGTCGATGATGACAAGGCTTTATATGTAGCGAGGGCTCAGAGGAAAGCAGAAAGAGAGGCTGAGTTGAAAGCCAAATTTGAGCAGGAAAGAATAAGTAAATATGAGAAATTACAAGGTGCTAATTTGTATCTGAAAAATCTTGATGATAACATCAATGATGAAAAATTGAAGGAGATGTTTTCTGAGTTTGGTACAACAACATCTTGCAAGGTAATGGTTGATATGCATGGACATAGCAAGGGTGCTGGTTTTGTTGCTTTTTCTTCTCCAGAGGAAGCTAGTAAAGCTATGATTGAAATGAATGGTAAGATGATTGGACGGAAGCCTTTGTATGTTGCTGTGGCTCAGCGCAAAGAAGAGAGGAAAGCTCGTTTGCAAGCTCAGTTTTCTCAATTGCAAGCCCCAAGTGGAATGACACCTTTGTCTCCGTATCATCCCGCAGCACCAAGACTTCCTCAACCTTTGTATTATGGTCAAGGTGCTGGACTTGTAGCACCTCAGCCAACAGGATATGGCTTCCAGCAGCAACTTATGCCCAGCATGCGTCCTGGAGTATCTCCAAATTTCATTATGCCATACCATCTTCAGAGGCAGGGTCCTCCTGGACAGGGTTCGCATGGACAAAGGATGGGTACTAGAAGAGCTGGAAACTTTCAATCAGTGCAGCAGAACCAGATGTTATATCGAAACTCCAACCAAGGGTTTAGATATATTGGAAATGGTCGAAATGGCATGGATCCATATGTTCCTCAAGGTCTGGTGAGTCCAATGATGGCAATGCCCTTTGATGattactataatagccttgatgaagctacttcatcttcctctagtagtgaagaagaagccatagattccgaggaagaaatcttaccttatgaaggagacttactattggttagaaggcttcttaacaatcaaccaagtgaaattgaccaatctcaaagagagaacttAGAAGCCATGAGAAGAAGAGTCACAGAGCTTATTCGTCTCTCTATTTCCCTGCACTCACCAATAAAGCACAATAACCCTTTATCAAAGTCAGCACCACCCTCTTCTTTCTTTCAAACTTGTACTACTTTCTCAACCTCCATAACCCCTCCTCCTATCGAAGAACCCAACACCTCACCATCAAAGTCTCAAAGGGACTCACTCATTTTGGAACGGTTCAAGCAAAGGAAACTCAAAGGGTCTTCAAAAGACTCAAAGGGTGCCCCCCAAGGGTGTTCATCTTCAGTGCCGTCAAGTTCGGATTTTGATGCCGGGAAAGTGGTTCAAAGGGGTTTGCAGAATGAGAATGACCCCACCATGGTGGTGGCAAGTTTGAAGGAGTTGGGTGTGAGTGAGGAGCTTGTTGAGGTCATGGAGGGGATTGGGGAGTTTGTTCCTAGTGAGATACAGTGTGTGGTTGTTCCTGCTGTTTTGGAAGGGAAGAGTGTGTTGTTGAGTGCACCATCTGAACCTGACAGAACCTTGGCCTTCTTGTTGCCCCTTATTCAGCTGCTAAGACGGGACAGAGAGTTACTTGGTTCAAATTCAAAGCATCCGCAGGCCATTGTCCTTTGTGCTACAGAGGAGAAAGCTGCACAGTGCTTCAATGCTGCAAAATATATCATCGATAAAGCAGAATTGAAGTCTTTAAAGGATGGTGCTTCACCAAATAACGGGAATGCTTCAATTGGCCTCTTGATTGGAACTCCTTGTGAGATTCTTCAATACATTGAAGAGGGGAGTGTTGTGTTGGATGAGGTGGATTGCATGCTTGGTAGTGGCCTTGATCCTGAAATCCATAAAATTCTCAGACCATTGCAAGAACATGAGTCAAAATCTTCTGTCAAAAGATTACAAACTATTTTGGCAATTTCAACTATAGCTGAG 2919 0.4135 MILVSTRPKRRDSTNPNTPTNHASTVYKLPFPLSLPTHTQHITTPSIVPFFKDRRGKQPQTYQKNQKKSPIFFSEKQMAAAISAPTTALPVAALNTAQFGNASLYVGDLEGNVNEGQLYDLFSQVAQVLSIRVCRDQTRRSSLGYAYVNFSNPQDAANAMEHLNYTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGSVLSSKVAVDGITGQSKGYGFVQFDNEESAQNAIKQLNGMLINDKKVYVGLFVRRQERAEANGSPKFTNVYVKNISETYTDEDLKKLFSPYGTITSAVIMTEPNGKSKCFGFVNFESPDSAAAAVDRLNGSIVDDDKALYVARAQRKAEREAELKAKFEQERISKYEKLQGANLYLKNLDDNINDEKLKEMFSEFGTTTSCKVMVDMHGHSKGAGFVAFSSPEEASKAMIEMNGKMIGRKPLYVAVAQRKEERKARLQAQFSQLQAPSGMTPLSPYHPAAPRLPQPLYYGQGAGLVAPQPTGYGFQQQLMPSMRPGVSPNFIMPYHLQRQGPPGQGSHGQRMGTRRAGNFQSVQQNQMLYRNSNQGFRYIGNGRNGMDPYVPQGLVSPMMAMPFDDYYNSLDEATSSSSSSEEEAIDSEEEILPYEGDLLLVRRLLNNQPSEIDQSQRENLEAMRRRVTELIRLSISLHSPIKHNNPLSKSAPPSSFFQTCTTFSTSITPPPIEEPNTSPSKSQRDSLILERFKQRKLKGSSKDSKGAPQGCSSSVPSSSDFDAGKVVQRGLQNENDPTMVVASLKELGVSEELVEVMEGIGEFVPSEIQCVVVPAVLEGKSVLLSAPSEPDRTLAFLLPLIQLLRRDRELLGSNSKHPQAIVLCATEEKAAQCFNAAKYIIDKAELKSLKDGASPNNGNASIGLLIGTPCEILQYIEEGSVVLDEVDCMLGSGLDPEIHKILRPLQEHESKSSVKRLQTILAISTIAE 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00898 973 MobiDBLite consensus disorder prediction 731 747 - -
Cca08g00898 973 CDD RRM1_I_PABPs 103 182 - -
Cca08g00898 973 Pfam DEAD/DEAH box helicase 812 966 IPR011545 GO:0003676|GO:0005524
Cca08g00898 973 Coils Coil 355 383 - -
Cca08g00898 973 Gene3D - 52 188 IPR012677 -
Cca08g00898 973 Gene3D - 273 374 IPR012677 -
Cca08g00898 973 SUPERFAMILY RNA-binding domain, RBD 102 271 IPR035979 GO:0003676
Cca08g00898 973 MobiDBLite consensus disorder prediction 8 25 - -
Cca08g00898 973 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Cca08g00898 973 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 388 456 IPR000504 GO:0003723
Cca08g00898 973 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 174 IPR000504 GO:0003723
Cca08g00898 973 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 349 IPR000504 GO:0003723
Cca08g00898 973 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 102 606 IPR006515 GO:0003723
Cca08g00898 973 MobiDBLite consensus disorder prediction 705 767 - -
Cca08g00898 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 779 963 IPR027417 -
Cca08g00898 973 PANTHER POLYADENYLATE-BINDING PROTEIN 91 612 - -
Cca08g00898 973 MobiDBLite consensus disorder prediction 1 25 - -
Cca08g00898 973 CDD RRM2_I_PABPs 188 264 IPR045305 -
Cca08g00898 973 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 818 973 IPR014001 -
Cca08g00898 973 PANTHER RNA BINDING PROTEIN 91 612 - -
Cca08g00898 973 CDD RRM3_I_PABPs 281 361 - -
Cca08g00898 973 CDD RRM4_I_PABPs 385 463 - -
Cca08g00898 973 Gene3D - 766 973 IPR027417 -
Cca08g00898 973 Gene3D - 189 272 IPR012677 -
Cca08g00898 973 Gene3D - 383 485 IPR012677 -
Cca08g00898 973 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Cca08g00898 973 SMART rrm2_1 387 459 IPR003954 GO:0003676
Cca08g00898 973 SMART rrm2_1 191 264 IPR003954 GO:0003676
Cca08g00898 973 SMART rrm2_1 103 176 IPR003954 GO:0003676
Cca08g00898 973 SMART rrm2_1 283 355 IPR003954 GO:0003676
Cca08g00898 973 MobiDBLite consensus disorder prediction 750 766 - -
Cca08g00898 973 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 386 463 IPR000504 GO:0003723
Cca08g00898 973 SUPERFAMILY RNA-binding domain, RBD 281 467 IPR035979 GO:0003676
Cca08g00898 973 MobiDBLite consensus disorder prediction 705 730 - -
Cca08g00898 973 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 268 IPR000504 GO:0003723
Cca08g00898 973 SMART rrm1_1 387 459 IPR000504 GO:0003723
Cca08g00898 973 SMART rrm1_1 191 264 IPR000504 GO:0003723
Cca08g00898 973 SMART rrm1_1 103 176 IPR000504 GO:0003723
Cca08g00898 973 SMART rrm1_1 283 356 IPR000504 GO:0003723
Cca08g00898 973 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 360 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00898 Cca-Chr8 20236872 20289701 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00898 65 598 Eukaryotic Initiation Factors Gene Family AT1G22760 58.135 0.0 595