Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00895 ATGATTCTGGTTAGTACGAGGCCTAAGCGCCGCGATTCAACAAACCCAAACACGCCAACAAACCACGCTTCAACCGTATATAAACTCCCCTTCCCTCTCTCACTCCCAACACACACACAACACATCACAACTCCTTCCATTGTTCCCTTCTTCAAAGACAGAAGAGGGAAACAACCCCAAACATATCAAAAAAACCAAAAAAAATCCCCAATTTTCTTTTCGGAAAAACAAATGGCGGCGGCGATTTCTGCTCCGACGACGGCGCTTCCCGTGGCGGCATTGAACACTGCGCAATTCGGTAACGCTTCGCTGTACGTGGGGGATCTTGAGGGAAACGTGAACGAGGGGCAATTGTATGATCTTTTCAGCCAAGTGGCGCAGGTGCTTTCCATTAGGGTTTGCAGGGATCAGACGAGGCGATCCTCTCTCGGTTACGCTTATGTCAACTTTTCCAACCCTCAAGATGTACGAGGCCTAAGCGCCGCGATTCAACAAACCCAAACACGCCAACAAACCACGCTTCAACCGTATATAAACTCCCCTTCCCTCTCTCACTCCCAACACACACACAACACATCACAACTCCTTCCATTGTTCCCTTCTTCAAAGACAGAAGAGGGAAACAACCCCAAACATATCAAAAAAACCAAAAAAAATCCCCAATTTTCTTTTCGAAATTTTTTTACAAGGTTTGAGACTCTTGCAGGAAAAACAAATGGCGGCAtttga 729 0.4636 MILVSTRPKRRDSTNPNTPTNHASTVYKLPFPLSLPTHTQHITTPSIVPFFKDRRGKQPQTYQKNQKKSPIFFSEKQMAAAISAPTTALPVAALNTAQFGNASLYVGDLEGNVNEGQLYDLFSQVAQVLSIRVCRDQTRRSSLGYAYVNFSNPQDVRGLSAAIQQTQTRQQTTLQPYINSPSLSHSQHTHNTSQLLPLFPSSKTEEGNNPKHIKKTKKNPQFSFRNFFTRFETLAGKTNGGI 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00895 242 SMART rrm1_1 103 179 IPR000504 GO:0003723
Cca08g00895 242 MobiDBLite consensus disorder prediction 1 25 - -
Cca08g00895 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 157 IPR000504 GO:0003723
Cca08g00895 242 MobiDBLite consensus disorder prediction 177 206 - -
Cca08g00895 242 MobiDBLite consensus disorder prediction 8 25 - -
Cca08g00895 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 157 IPR000504 GO:0003723
Cca08g00895 242 SUPERFAMILY RNA-binding domain, RBD 88 157 IPR035979 GO:0003676
Cca08g00895 242 PANTHER POLYADENYLATE-BINDING PROTEIN 91 153 - -
Cca08g00895 242 Gene3D - 93 174 IPR012677 -
Cca08g00895 242 MobiDBLite consensus disorder prediction 177 219 - -
Cca08g00895 242 PANTHER RNA BINDING PROTEIN 91 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00895 Cca-Chr8 20194000 20202572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00895 79 165 Eukaryotic Initiation Factors Gene Family AT4G34110 52.874 4.34e-22 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00895 K13126 - pop:7492495 116.701