Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00894 ATGCTTCTAATTCTAAAAGGACCCCTCGGTTATCTGAACCTAAACCCCCAAAGCGCCACACACATGGCGGGAGCCACAGGAAGAACCCTCTTCACCCTctcctcctcctctcccctcacgcgcctcctcgccaagcgcctccccctccgcctccgccccctctgctccgtcgcggcggcaccagaagccgccgccgcGAAGCACTCGGTGCTCCTCGAGAGGCTCCGAGCCCGGCACCTCAGGGACGCCGCGAAAACCGCCCCCGAACCGAGGAAGAGGGCGAAGGGTGGAAGTGGTTCCGTTGCGGAGAATGAGAGGGTTAAGGAGAAGAAGGTGGTTGCGAGCTTCGAGGAGTTGGGAGTGAGCGAGGAGGTCATGGGGGCGGTTAGGGAAATGGGAATTGAAGTGCCTACGGAGATTCAGGGTATTGGTATCCCCGCCGTTTTGGAGGAGAAGAGCGTTCTTTTGGGGTCTCATACTGGCTCTGGCAAGACCCTTGCTTACTTTCTTCCCCTTGTTCAGTTGCTAAGACGGGATGAACAACTGAATGGAATACTGTTGAAGCCCAGACGTCCCCGAGCTGTTGTGCTTTGTCCTACAAGGGAGTTGTCTGAGCAGGTTTTTCGAGTTGCAAAGTCTATAAGCCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGCCGGCTTAGGCCTCAGGAGGATTCACTTAATAACCCCATTGATATGGTAGTTGGTACCCCTGGCAGGGTTCTTCAACATATCGAGGAGGGAAATATGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATCGAGGCTTTGGTCCTGATATACGCAAATTTCTGGGCCCATTAAAAAACCGCACTTCAAAAGCTGATGGCCTAGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGCTGTGCAAAAGCTGATTGATGAGGAGTTTCAAGGCATTGTTCATCTGCGCACATCAACATTACATAAAAAGATTTCGTCGGCTCGCCATGATTTTATTAAACTTTCAGGTTCTGAGAACAAGCTTGAAGCATTACTTCAGGTACTAGAGCCAAGCCTAGCAAAAGGCAACAAGGTGATGGTTTTCTGCAATACATTGGACTCAAGTCGTGCTGTGGATCATTATCTTGCTGAAAATCAGATTTCTACTGTGAACTACCATGGGGAGGTACCAGCAGAGCAAAGGGTTGAAAATCTCAGAAAGTTTAAGAGTGATGGTGATGATTGTCCTACATTGGTTTGCACGGACTTGGCTGCTAGGGGTCTGGACATGGATGTAGATCATGTTGTCATGTTTGACTTCCCCTTGAATTCCATTGACTATCTTCATCGCACAGGCAGAACTGCTCGCATGGGTGCAAAAGGGAAGGTAACAAGTTTGGTTGCTAAAAAGGACTTGGATTTGGCCAGAAAAATAGAGGAAGCAATAAAGAAGAATGAGAGTTTGGAGGCTATAACAAAAGATAGTGTGCGAAGGGACGCAAGGACACAAAGCACTGAGCAGAAGGGAAAGAGCAAAAGATTGGTTAAAGTTTCAAAAGTTAAGGGAAAATATGGTAGTCGTGCCAGTTCAGGGAATAATGGGTCAGGTATGAAATCTGGTAAAGGGTCACCATTCAAATCCATGAAGAAAGGGATTAACGTTTCAAAATCTGTAAAATCTTCCAGTGCAAGTAGCGTGAGAAAAGCTTCAGAGAATAAGCAAACAAGTAAAATGGTCAGTGCCACTAAATCTACAAACTCTAAACTCAATGTTGTGGGGTTTAGGGGGAAAAATTCATCAAATAATAATTCGGTTATGTGA 1851 0.4344 MLLILKGPLGYLNLNPQSATHMAGATGRTLFTLSSSSPLTRLLAKRLPLRLRPLCSVAAAPEAAAAKHSVLLERLRARHLRDAAKTAPEPRKRAKGGSGSVAENERVKEKKVVASFEELGVSEEVMGAVREMGIEVPTEIQGIGIPAVLEEKSVLLGSHTGSGKTLAYFLPLVQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNNPIDMVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRTSKADGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKLEALLQVLEPSLAKGNKVMVFCNTLDSSRAVDHYLAENQISTVNYHGEVPAEQRVENLRKFKSDGDDCPTLVCTDLAARGLDMDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLDLARKIEEAIKKNESLEAITKDSVRRDARTQSTEQKGKSKRLVKVSKVKGKYGSRASSGNNGSGMKSGKGSPFKSMKKGINVSKSVKSSSASSVRKASENKQTSKMVSATKSTNSKLNVVGFRGKNSSNNNSVM 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00894 616 MobiDBLite consensus disorder prediction 563 616 - -
Cca08g00894 616 CDD DEADc 125 324 - -
Cca08g00894 616 Gene3D - 81 333 IPR027417 -
Cca08g00894 616 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 43 542 - -
Cca08g00894 616 Pfam DEAD/DEAH box helicase 138 321 IPR011545 GO:0003676|GO:0005524
Cca08g00894 616 Gene3D - 338 608 IPR027417 -
Cca08g00894 616 MobiDBLite consensus disorder prediction 535 550 - -
Cca08g00894 616 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 114 142 IPR014014 GO:0003724
Cca08g00894 616 CDD SF2_C_DEAD 345 477 - -
Cca08g00894 616 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 357 507 IPR001650 -
Cca08g00894 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 489 IPR027417 -
Cca08g00894 616 MobiDBLite consensus disorder prediction 81 104 - -
Cca08g00894 616 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 43 542 - -
Cca08g00894 616 SMART helicmild6 386 468 IPR001650 -
Cca08g00894 616 MobiDBLite consensus disorder prediction 504 616 - -
Cca08g00894 616 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 332 IPR014001 -
Cca08g00894 616 SMART ultradead3 133 352 IPR014001 -
Cca08g00894 616 MobiDBLite consensus disorder prediction 504 523 - -
Cca08g00894 616 Pfam Helicase conserved C-terminal domain 357 468 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00894 Cca-Chr8 20156920 20165261 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00894 113 490 Eukaryotic Initiation Factors Gene Family AT3G19760 28.497 1.15e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00894 - - vun:114182370 934.095