Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00859 ATGGAGTATGAGAATTCAAGTATAGAGGTGGTAGTAGATAATTGTGAAAGCATAAATGAAGGAAATTGTGAAAGCATAAATGAAGGAGTAGATAATTTTGAAGGCATAAATGAAGGAGTATCTAATTTTGAAGCCATAAATgaaggagaagataatataaatgagaatgaggaagatgagaatTTGGTTATTGATTTTGAGCAAATTTGTGAAGAAGTGGAAAATGTTGTTAATGAAGGAAGAGTCGAGGTTTTTGACAGTGAAAAGGGGGTCATAGTTTCTACTTTGGATGATATTTTTAATTTAGATTTGCATTTAAGTCCACATGAGCTTAGTAATGTTCAATTTGTAAGTGTTGAGATGGCTTACTTATTTTATTACTGGTTTGCAAAAGTTAATGGATTTGCCGCAAGAAAAAGCAAGATTTTGAGAAATATTAAGGGGGGAAAATTACAACAAACATTTGTTTGTTTCAAGGAAAGATTTAGAGATAAGCGTCGTTTGAACATACGGAATCGAAAGCGAAAGAAAACACCCGAGACAAGGTGCAGATGCGAAGCAAAACTAAGAGTGTATATTGATAGCAGATGTGGACTATGGTACATTACATATTTTCTGGATGACCACAACCATAGAGATATGAATCACCCTGGAGGGTATGAAAGACTTTCTTTTTGTAAAAAGGACATATACAATAAAATTGGAAGGCAAAGAAGGTTGGAAGGTTTGGATTCTAAATCTGCCTTGGAATTTTTGAATGGTTTAAAATGCAATGATCCTTTAATGTATGTTGGTCACACTGTTGATGACGAAAACAAATTGCAACATTTGTTCTGGTGTGATGGCATGATGCAGATGGAGTATGAAGTATTTGGTGATGTGTTAGCATTTGATGCAACATATGGGAAAAATAAGTATTTATGTCCTGTAGTTGTATTTTCTTGTGTTAATCATCACAATCATATGATAGTATTTGGGAGTGCTATTGTTTCAAATGAAACTGAAGAAACATATATTTGGGTACTTGAGCAATTTGTAGAAGCCATGAAAGGAAAGTCACCAATGTCTATTATCACTGATGGTGATGTTGCAATGAAAAATTCCATAAGAAAGGTATTTCCTAATTCACACCATAGATTGTGTGCATGGCACTTATTAAGGAATGCGACAACTAACATTAAGAAGCCGACATTTACAAAGGATTTAAGAAAATGCATGTTGGGTGAGTATGAAATTGGTGAATTTCGAAAGAAGTGGTCTGAAATGTTGAACAAGTTTGAGTTGCATGATCATCCTTGGGTTATAGAGTTATTTGAAAAGAGGAAGATATGGTGTACAACTTATATTAGAGGGGCTTTCTTTGCTGGTTTTAGGCAACTTCTCGGTGTGAAGGATTACATTCTGAGTTGA 1410 0.3326 MEYENSSIEVVVDNCESINEGNCESINEGVDNFEGINEGVSNFEAINEGEDNINENEEDENLVIDFEQICEEVENVVNEGRVEVFDSEKGVIVSTLDDIFNLDLHLSPHELSNVQFVSVEMAYLFYYWFAKVNGFAARKSKILRNIKGGKLQQTFVCFKERFRDKRRLNIRNRKRKKTPETRCRCEAKLRVYIDSRCGLWYITYFLDDHNHRDMNHPGGYERLSFCKKDIYNKIGRQRRLEGLDSKSALEFLNGLKCNDPLMYVGHTVDDENKLQHLFWCDGMMQMEYEVFGDVLAFDATYGKNKYLCPVVVFSCVNHHNHMIVFGSAIVSNETEETYIWVLEQFVEAMKGKSPMSIITDGDVAMKNSIRKVFPNSHHRLCAWHLLRNATTNIKKPTFTKDLRKCMLGEYEIGEFRKKWSEMLNKFELHDHPWVIELFEKRKIWCTTYIRGAFFAGFRQLLGVKDYILS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00859 469 Pfam MULE transposase domain 294 388 IPR018289 -
Cca08g00859 469 PANTHER OS02G0262500 PROTEIN 233 457 - -
Cca08g00859 469 PANTHER OS02G0262500 PROTEIN 111 211 - -
Cca08g00859 469 Pfam FAR1 DNA-binding domain 125 212 IPR004330 -
Cca08g00859 469 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 233 457 IPR031052 GO:0006355
Cca08g00859 469 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 111 211 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00859 Cca-Chr8 19183215 19184848 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca08g00859 MULE 1.3e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00859 - - ccaj:109791994 626.706