Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00854 ATGGGTCTGTCTTCACCATCATTGGCTGGCCAAGCAATCAAGCTTGCACCCTCCACCCCAGAGCTTGGCAATGGAAGGGTCAGCATGAGGAAAACAGCCTCCAAAAGCGTTTCCTCAGGAAGCCCATGGTACGGCCCAGACCGTGTAAAGTACTTGGGCCCATTCTCAGGTGAGGCCCCATCGTACCTGACTGGTGAATTCCCAGGTGACTATGGTTGGGACACTGCTGGGCTTTCTGCTGACCCAGAGACTTTTGCCAGAAACCGTGAACTGGAAGTGATCCACTCGAGATGGGCCATGTTGGGAGCCTTGGGCTGCGTCTTCCCTGAACTATTGGCCCGCAATGGTGTCAAGTTTGGCGAGGCCGTGTGGTTCAAGGCTGGGTCTCAGATATTCAGCGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCTTGATCCATGCACAGAGCATCCTTGCCATCTGGGCCACCCAGGTTATTTTGATGGGTGCTGTTGAGGGTTACCGTATTGCCGGTGGGCCTCTTGGTGAGGTGACAGACCCAATCTACCCAGGTGGGAGCTTTGACCCATTGGGCCTTGCAGATGACCCAGAGGCCTTTGCTGAGTTGAAGGTGAAAGAGTTGAAGAATGGTAGGTTGGCCATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCCATTGTCACTGGAAAGGGACCTTTGGAAAACCTTGCTGATCACTTAGCTGACCCAGTTAACAACAATGCTTGGGCCTATGCCACAAACTTCGTCCCCGGAAAGTGA 780 0.5333 MGLSSPSLAGQAIKLAPSTPELGNGRVSMRKTASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00854 259 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 259 IPR001344 GO:0009765|GO:0016020
Cca08g00854 259 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2, CHLOROPLASTIC 1 259 - -
Cca08g00854 259 SUPERFAMILY Chlorophyll a-b binding protein 42 256 - -
Cca08g00854 259 Pfam Chlorophyll A-B binding protein 59 225 IPR022796 -
Cca08g00854 259 Gene3D Chlorophyll a/b binding protein domain 50 252 - -
Cca08g00854 259 MobiDBLite consensus disorder prediction 20 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00854 Cca-Chr8 19015272 19016051 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00854 1 259 Chloroplast and Mitochondria Gene Families AT1G29930 88.168 3.17e-169 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00854 K08912 - ccaj:109815895 531.176