Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00839 atggagatgagaagcagtgaagagatagaaatagggagagacataACCCCAACACTCACTCCTCTCTCTTTCTCACTCCACAATTCCCATCTTCACACTCACTGCTCTGCTTGTTTCTCTCCCAATCCCAATCCCTATTCcctcttcttctgctcccctccctgctccgccgcactctcctcctcctcctccgccgaccgccacctccctccctccgcccacaccgccgaactccgcgccgccctccgcctcctcctccgcccctccccctccgccctcctctccaaccgccgcatcctcACAGCTCACCAAGACGACGACGTTTCCCAGAATATCAGGGTCGGCGCCAGCGCCGTTGCCCATGCCATAGCGGAGCAGCGCGGCGTCCCCTACGACGACGCCGTTTTGGAGGAGGCCACGGTCGCGCTCTGCGTCGTGCTAACGAACGCCGTGGAGGTGCAGGATAGCGAGGGGCGCGCCCTGGGAATCGCTGTCTTCGACCACACCTTCTCTTGGATCAACCACAGTTGTTCCCCCAATGCTTGCTACCGTTTCATCCTCTCTTCTCATTCTTCTTCGCAATGTGAGGGAGCTGCACTGCGCATTTCTCCGCATCAAATGGGCAGTGGAGTTCGTGTTAGCACTAGTGAATTTGTAAAAGGCGAGTTGGGTTATGGTCCAAGATTGGTTGTGAGAAGTATCAAGAAAATTAAAAAGGGAGAAGAGGTTACTGTGGCTTATACTGATCTCTTACAGCCCAAGGCAATGAGACAGTCGGAGCTATGGTCAAAGTATAGATTTATTTGTTGCTGCAAACGATGTAGTGCCCTGCCCTTTTCATACGTAGATCATGCATTGCAAGAAATTTCTGCTTTCAGTTGTGATTCATCTAGTTCATGTGATGATTACAAGTTCCTCAAAGAGACGGCTGATAGAAGATTGACCGAGTGCATTGATGATGTCATATCAGAGTATCTTTCTGTTGGTGATCCTGAGTCTTGTTGTGAGAAGCTTGAGAAGATACTCACACAAGGTCTAAATGATCAGTTAGAAGGCATTGAAGGAAAAGCAGATGCTAAATTCATGCTGCATCCCCTACATCACCTCTCTCTAGAAGCCTATACAACACTGGCTTCAGCATATAGAGTTTGTGCTAATGATTTATTGTCTGTTGATTCTGAAATAGATATAAACCGGTTAAAAGCTTTTGACTTGAGCAGGACAAGTGCTGCATATTCTTTGTTACTTGCAGGTGCAACTCATCATCTCTTCAATTCTGAATCCTCACTGATTGCATCTGTTGCAAATTTTTGGACAGGAGCTGGCGAATCTTTGTTATCCCTTAGCAGAAGTTCTGGAGGGAGTGTGTGCGTTAATATTGGTCGGGTTGTTCCAAACCTCGCTTCTGTGACGAAATTCAAATGGTCGCAGTGTTCATTAATAGATAGGTTTAGAGCCTGTATATCAAGTGGTCAAATTAAAAGTGCAGATTTTGAGAATGTATCAAATGAGTTTCTTCATTGTGTCTCAGATATGACACAGAAAGTTTGGGGTTTCCTTATCTCTGATTGCCATTTTCTGAGATCATGTAAAGATCCTATTGATTTCAGCTGGCTAATGTCTACCAAAAGTTTCAGTGCAGTGGATATTGAGACTTGTGTTAACAAAACTGACATGTGTTACACCCATGGATATGAAAATAACATCTGTATTTTTGGAGAAGAAACTTACACTGATCATGCAGTAGCATGTATTTTCCGGCTTGGCTTACACTGCTTAGCATATGGAGGATTATTAGCTAGTATTTGTTATGGCCCCCATTCCCATTTGGTTTGTCATGTTCAAAATGTTCTAGATCATGAAATGAATTTTGTATATCATGAAGAATCTTGA 1893 0.3867 MEMRSSEEIEIGRDITPTLTPLSFSLHNSHLHTHCSACFSPNPNPYSLFFCSPPCSAALSSSSSADRHLPPSAHTAELRAALRLLLRPSPSALLSNRRILTAHQDDDVSQNIRVGASAVAHAIAEQRGVPYDDAVLEEATVALCVVLTNAVEVQDSEGRALGIAVFDHTFSWINHSCSPNACYRFILSSHSSSQCEGAALRISPHQMGSGVRVSTSEFVKGELGYGPRLVVRSIKKIKKGEEVTVAYTDLLQPKAMRQSELWSKYRFICCCKRCSALPFSYVDHALQEISAFSCDSSSSCDDYKFLKETADRRLTECIDDVISEYLSVGDPESCCEKLEKILTQGLNDQLEGIEGKADAKFMLHPLHHLSLEAYTTLASAYRVCANDLLSVDSEIDINRLKAFDLSRTSAAYSLLLAGATHHLFNSESSLIASVANFWTGAGESLLSLSRSSGGSVCVNIGRVVPNLASVTKFKWSQCSLIDRFRACISSGQIKSADFENVSNEFLHCVSDMTQKVWGFLISDCHFLRSCKDPIDFSWLMSTKSFSAVDIETCVNKTDMCYTHGYENNICIFGEETYTDHAVACIFRLGLHCLAYGGLLASICYGPHSHLVCHVQNVLDHEMNFVYHEES 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00839 630 PANTHER PROTEIN SET DOMAIN GROUP 41 1 621 - -
Cca08g00839 630 Gene3D SET domain 118 247 IPR046341 -
Cca08g00839 630 ProSitePatterns Zinc finger C2H2 type domain signature. 51 74 IPR013087 -
Cca08g00839 630 Pfam SET domain 170 247 IPR001214 GO:0005515
Cca08g00839 630 CDD SET_SMYD 133 274 - -
Cca08g00839 630 SUPERFAMILY SET domain 147 275 IPR046341 -
Cca08g00839 630 Gene3D Tetratricopeptide repeat domain 249 386 IPR011990 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca08g00839 SET 4.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00839 - - gmx:100775193 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00839 08 18156361 18160272 Cca08g00839 08 18156361 18160272 ECH