Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00834 ATGGTGCCAGGCGAGACTCCAAAGAGTGGTCTTTGTCTTACTCATGTCAGGCACGAGAAAAGAGACTCATCTTTGCCTGGGTTCACATCGGACGCTAGAATGTGTGTCACTAGGTGTGAGTTAAGAAGAAAGCTCTCTACTTGTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTTGTGAGGAGACAGGCTGTGGATATCTCACCCCTCCGACGTGTTAATCAGGCTATCTATCTTCTAACAACCGGTGCTCGTGAAGCTGCTTTCAGGAATATCAAGACCATTGCTGAATGCTTGGCTGATGAGCTTATTAATGCAGCAAAGGGTTCATCCAACAGTTATGCCATCAAGAAAAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCGTTAA 402 0.4602 MVPGETPKSGLCLTHVRHEKRDSSLPGFTSDARMCVTRCELRRKLSTCGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00834 133 Pfam Ribosomal protein S7p/S5e 42 133 IPR023798 -
Cca08g00834 133 Coils Coil 122 133 - -
Cca08g00834 133 Gene3D Ribosomal protein S7 domain 40 133 IPR036823 -
Cca08g00834 133 PANTHER RIBOSOMAL PROTEIN S7 48 133 IPR000235 GO:0006412
Cca08g00834 133 SUPERFAMILY Ribosomal protein S7 45 133 IPR036823 -
Cca08g00834 133 PANTHER 40S RIBOSOMAL PROTEIN S5 48 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00834 Cca-Chr8 18078341 18081044 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00834 45 133 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 94.382 2.45e-55 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00834 K02989 - csv:101209853 164.466