Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00831 ATGTCCTTCCGCAGTATTGTTCGTGATGTAAGGGATGGATTTGGAAGCCTATCAAGGCGGAGTTTTGAGGTAAGGCTTCCTAGCCATCACTGGGGCAGGTCAAATAGTTCGGTCCATGAGGCGCAGGAACGTCCGCCGGTAATACAAAACAGCCGGTGGGCTGGCCTTCCGCCTGAGCTTCTTCATGATGTTATTAGAAGATTGGAAGAAAGTGAGAGTACATGGCCGGCTCGTAAGAATGTGGTTGCGTGTGCCGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTACCAGTCTCGAGTCCTGTGGGAAGATTACTTTCCCAGTCTCCCTGAAGCAGCCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACTTACCATCTATTCCTTTGTCTTAGTCCTGCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACGAGAAGAACAACATGCACTGAGTATATTATATCAATGGATGCGGATAACATATCTAGATCTAGTAGCACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAGTTCATAATTTATGATACACAGCCTCCCTATAACAACTCTCAGCTGTCTCCTCCTGGCCGAAGCCGTAGGTTTAATTCAAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATTGCCCAGATCACCTATGAGCTGAATGTCCTCGGTACTAGGGGCCCGCGCAGGATGAACTGCACCATGCACTCAATCCCCATATCATCCCTCGAGCCTGGCGGCACTGTTCCAGGCAAGCCAGAGCTCCTTCCCCGCTCCCTTGAAGATTCCTTCCGAAGCATATCCTTTGCTAGGTCAATCGACAACTCAACTGAGTTCAGCAGCTCTAGGTTCTCAGACATAGTCATGGCCGGCAGCGAAGAGGAGCAGGGAAAGGACAGGCCCTTGGTTCTCAAGAACAAAGCTCCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTCAACTTTAGGGGGAGAGTGACTGTTGCCTCTGTCAAGAATTTCCAGCTGATTGCTTCAACGCAGCCTGCAGCTGGAGCCGGTGCTCCTGTGCCATCATCCCAGCCGGCGCAGTCCGATCATGACAAGATCATTCTTCAGTTTGGTAAGGTCGGCAAGGATATATTTACTATGGACTATAGATATCCCCTATCTGCATTTCAGGCCTTTGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAG 1284 0.4829 MSFRSIVRDVRDGFGSLSRRSFEVRLPSHHWGRSNSSVHEAQERPPVIQNSRWAGLPPELLHDVIRRLEESESTWPARKNVVACAAVCKSWREMCKEIVTSLESCGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNSQLSPPGRSRRFNSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMHSIPISSLEPGGTVPGKPELLPRSLEDSFRSISFARSIDNSTEFSSSRFSDIVMAGSEEEQGKDRPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPAAGAGAPVPSSQPAQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00831 427 Pfam Tub family 114 422 IPR000007 -
Cca08g00831 427 Gene3D - 48 102 - -
Cca08g00831 427 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 1 427 - -
Cca08g00831 427 PANTHER TUBBY-RELATED 1 427 - -
Cca08g00831 427 MobiDBLite consensus disorder prediction 207 228 - -
Cca08g00831 427 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Cca08g00831 427 Gene3D Tubby Protein; Chain A 110 427 IPR025659 -
Cca08g00831 427 SUPERFAMILY F-box domain 41 96 IPR036047 GO:0005515
Cca08g00831 427 SUPERFAMILY Tubby C-terminal domain-like 103 427 IPR025659 -
Cca08g00831 427 Pfam F-box domain 53 99 IPR001810 GO:0005515
Cca08g00831 427 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cca08g00831 427 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cca08g00831 427 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cca08g00831 427 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Cca08g00831 427 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Cca08g00831 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Cca08g00831 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Cca08g00831 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00831 Cca-Chr8 17940488 17945841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00831 1 427 TUB Transcription Factor Family AT1G76900 68.410 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Cca08g00831 Tub 5.8e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00831 K19600 - gmx:100799499 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00831 08 17940488 17945841 Cca02g02166 02 41988442 41992771 PCT