Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00830 ATGAAGAGTTTTTTGTTAGGTTGTGTGGCGATTGTAGAGAAAAATAAACCATATGTTGCAATGCTGTTCATTCAGTTCGTGTATGCAGGAATGGCCTTGTTGTCTAAGGCTGCAATTTCCAAGGGAATGAGCCCTTACGTGTTTGTTGTTTATAGACAAGCCTTTGCAACAGTTGCCTTATCTCCATTTGCATACTTTGACAGCAAGCAATCAGCTCCTTTGTCATGCAACTTCTTGTGCAAATTGTTTCTAGTTTCCCTTGTTGGGTTAACGGCGAGTTCAAACCTTTACTATGTTTCAATCAACTACACCACTGCAACATTTGCTGCAGCCTCCACAAACACTGTCCCTGCCATTACCTTTATCATGGCTGTTTTAATAAGGGTTGAAGTCATTTCCATAAAACGTGTGCATGGACTGGCCAAGGTTTTGGGTTCTATTCTAAGCCTTTCTGGGGCAATTGTATTTGCTTTAGTCAAAGGACCTCCCTTGGGATTCATGAAATGGTATTCAGAAAATCAGAACCATAATTCTCACCCTTTGGCAATTGTTCACTCCAAAGGTGATTTCATTAGAGGCTCTCTTATGATGCTCTCAGCAAACACTACATGGTCCTTGTGGCTCATCTTGCAGGGTTTTGTTGTAAAGCAGTACCCAGCTAAAATTCGTCTCACTACCCTACAATGCTTCTTTAGCTTCATGCAGTCTTCTGTTGTGGCTGTTGCAGCAGAGTGGAATAATCCTTCAGCATGGAAGCTTGGATGGGATATTCATCTTCTCTCTGTGGCATACTGTGGTGTAATTGTAACAGGCATTTGTTATTGGCTGCAAGTGTGCACAATAGAGACGAAGGGACCAGTTTTTACAGCAATGTTCACCCCTTTAGCTCTTATGATCACAGCAATTTTCTCAGCACTTTTGTGGAAGGAAACACTCTACTTGGGAAGTGTTGGTGGCACTATTTTACTAGTGGTTGGACTCTATAGCGTACTATGGGGGAAGAGCAAGGAGAGTGCAAAGCCACAAAACCTAGAAGCTGAACAAACAAAAGAGGAAACTAGATTGGAGTGCATTGTACAACATTGA 1086 0.4199 MKSFLLGCVAIVEKNKPYVAMLFIQFVYAGMALLSKAAISKGMSPYVFVVYRQAFATVALSPFAYFDSKQSAPLSCNFLCKLFLVSLVGLTASSNLYYVSINYTTATFAAASTNTVPAITFIMAVLIRVEVISIKRVHGLAKVLGSILSLSGAIVFALVKGPPLGFMKWYSENQNHNSHPLAIVHSKGDFIRGSLMMLSANTTWSLWLILQGFVVKQYPAKIRLTTLQCFFSFMQSSVVAVAAEWNNPSAWKLGWDIHLLSVAYCGVIVTGICYWLQVCTIETKGPVFTAMFTPLALMITAIFSALLWKETLYLGSVGGTILLVVGLYSVLWGKSKESAKPQNLEAEQTKEETRLECIVQH 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00830 361 PANTHER WAT1-RELATED PROTEIN 14 339 IPR030184 GO:0016021|GO:0022857
Cca08g00830 361 PANTHER WAT1-RELATED PROTEIN 14 339 - -
Cca08g00830 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 150 - -
Cca08g00830 361 Pfam EamA-like transporter family 17 150 IPR000620 GO:0016020|GO:0016021
Cca08g00830 361 Pfam EamA-like transporter family 192 331 IPR000620 GO:0016020|GO:0016021
Cca08g00830 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 253 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00830 Cca-Chr8 17864711 17869898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00830 16 351 Nodulin-like Gene Family AT2G39510 38.872 1.45e-83 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00830 - - gsj:114390241 635.95