Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00828 ATGCAGCTAGGAGACACAAGTGTGTTGGAGATCTCCTCCCATAACCAGGCCGAGATGGCGGTGGCGGCCGCGGCAACAGTGCCAGAAGGcgacaacgacaacgacaacgacaataacaataacaacaacGATGGCGACATGGTTGGGATGGAGGTTGATGGAAGTTCCGGCGAAGGAAATAATGAAGGTAATAGGATGAGCTTTGGAGGGAACCGGTGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATTCAGTGTTTCGAGATTCAAGTCTTAAAGGTCCACTTTGGGAAGAAGTTTCAAGGAAACTGGCAGGACTAGGATACCACCGAAGCGCAAAGAAGTGCAAGGAGAAATTTGAGAACGTGTACAAGTACAACAAGAGAACCAAAGAGAACAAAAGTGGCAAATCACATGGAAAAACCTACAAATTCTTTGATCAATTACAAGCCCTCGAAGTCTCAAATAACCCGCCAAAACCACAACCTCCTTTGCCAACAACAACAAACACATTAACATTGCCAACAAGGCCAAGTGATCATGGTAACAATGTTATCTCTTATGTCACACCTTTTCCTTCCACAAACCCTACACTCATTTCTCCTTcaccacaaaccactacatccaccaccaaccctagacaaccatcaccaccacaaaccaacaacaATAACAATATGCCACATTTTTTGCCCAACATGAACACCCCTTTCTCAACCACCTCCACCTCCACCTCTTCTTCCACAGCTTCAGATGAAGACTTggaagagaggtataagaggaagagaaagtggaagGACTACTTCAGGAGGCTCACAAAGAAGGTCCTATTGAAGCAAGAGGAGATGCAAAAGAAGTTCTTGGAAGCCATGGACCAAAGGGAGAGGGAAAGAATGGCACAACAAGAGAATTGGAGGATGCAAGAATTGGCAAGAGTCAATAGGGAACATGAGATTCTTGTGCAAGAGAGATCAACAGCATCAGCCAAAGATGCTGCGGTCATTGCATTGTTGCAAAAGCTGTGTACCCAACAAAACCCCTCACAAGCTGAAGTAGAGCCACCACAACACAAGCCAACAATGCCACAAACTCCAACACTAATAATGCCAAACAATAATTTTGAAATCATGAAGATAAGTAATGATCACactgctactattactgtcactactcctgttactgctactcctgttactgctgttgatgctattactactgctactgctgtcaccgctactgctacttctCCGATGAGTTGTTCTTCATCTAGGTGGCCAAAAGCCGAAGTTCATGCTTTGATAAGGTTGAGGACGAGTCTTGATACCAAGTATCAAGAAAATGGACCAAAAGCTCCATTGTGGGAAGATATATCAATTGCAATGCAGAGGCTTGGTTACAACCGGAGTGCGAAGAGATGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTGAGGGAGAGTAACAAGGAAAGGCGTGAAGATAGCAAGACATGTCCCTATTTTCATGAGCTTGATGCTCTATACAAAGAAAAGAACAAATCCCAGAACCCCTTTGGCATGTTCCAGAACATGAGGCCGAATGAGATGATGATGATGGAGCCATTGATGGTGCAACCTGAGCAACAATGGAGGCCTCCACCTCAAGAGGGTCAAGGGAAGGAGAATGCAAGTGAAGAATATCAAGAAAAAGAAGAAAatggtgataatgatgatgatgttgatgttggagatgGAGATAGTGTGGAAGCTGAAGGAGAAAGCCGGTTTGAGATTGCGACAAACAATTGA 1812 0.3791 MQLGDTSVLEISSHNQAEMAVAAAATVPEGDNDNDNDNNNNNNDGDMVGMEVDGSSGEGNNEGNRMSFGGNRWPRQETLALLKIRSDMDSVFRDSSLKGPLWEEVSRKLAGLGYHRSAKKCKEKFENVYKYNKRTKENKSGKSHGKTYKFFDQLQALEVSNNPPKPQPPLPTTTNTLTLPTRPSDHGNNVISYVTPFPSTNPTLISPSPQTTTSTTNPRQPSPPQTNNNNNMPHFLPNMNTPFSTTSTSTSSSTASDEDLEERYKRKRKWKDYFRRLTKKVLLKQEEMQKKFLEAMDQRERERMAQQENWRMQELARVNREHEILVQERSTASAKDAAVIALLQKLCTQQNPSQAEVEPPQHKPTMPQTPTLIMPNNNFEIMKISNDHTATITVTTPVTATPVTAVDAITTATAVTATATSPMSCSSSRWPKAEVHALIRLRTSLDTKYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKKVRESNKERREDSKTCPYFHELDALYKEKNKSQNPFGMFQNMRPNEMMMMEPLMVQPEQQWRPPPQEGQGKENASEEYQEKEENGDNDDDVDVGDGDSVEAEGESRFEIATNN 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00828 603 MobiDBLite consensus disorder prediction 174 255 - -
Cca08g00828 603 MobiDBLite consensus disorder prediction 159 263 - -
Cca08g00828 603 MobiDBLite consensus disorder prediction 549 603 - -
Cca08g00828 603 MobiDBLite consensus disorder prediction 28 71 - -
Cca08g00828 603 PANTHER - 1 598 - -
Cca08g00828 603 ProSiteProfiles Myb-like domain profile. 428 486 IPR001005 -
Cca08g00828 603 ProSiteProfiles Myb-like domain profile. 65 129 IPR001005 -
Cca08g00828 603 CDD GT1 428 493 - -
Cca08g00828 603 SMART sant 426 488 IPR001005 -
Cca08g00828 603 SMART sant 69 131 IPR001005 -
Cca08g00828 603 MobiDBLite consensus disorder prediction 571 588 - -
Cca08g00828 603 MobiDBLite consensus disorder prediction 31 46 - -
Cca08g00828 603 CDD GT1 71 136 - -
Cca08g00828 603 Pfam Myb/SANT-like DNA-binding domain 428 515 IPR044822 -
Cca08g00828 603 Pfam Myb/SANT-like DNA-binding domain 71 157 IPR044822 -
Cca08g00828 603 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 1 598 - -
Cca08g00828 603 Gene3D - 430 491 - -
Cca08g00828 603 Gene3D - 73 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00828 Cca-Chr8 17643150 17646642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00828 39 551 Trihelix Transcription Factor Family AT1G76880 49.046 8.82e-142 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca08g00828 Myb_DNA-bind_4 1.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00828 - - ccaj:109803612 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00828 08 17643150 17646642 Cca02g02167 02 42013867 42017380 PCT