Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00827 ATGCTGGGGGACTCAGCAGTGTTGGGAACAGGAGGAGGAGGCTCTGGAGATGCAGCCACAGCAATTTCTGCTGTGGCTGCATCAGGAAGAGCTAGCGATAGTGGTGGTGGTGACAACAACAACGGTGACAGATCAAATTCTGGAGATGATGAAAGGGGAAGAGTTGAGGAAGGTGACAGGAGCTTTGGTGGAAACAGGTGGCCGAGGCAAGAGACTCTGGCTTTGTTGAAGATAAGGTCAGATATGGACGTGGCTTTTAGAGATGCAAGTGTAAAGGGTCCCTTGTGGGAAGAGGTTTCTAGGAAACTGGCAGAGCTTGGCTACCACAGAAATGCCAAGAAGTGCAAAGAGAAATTCGAGAATGTTTACAAGTACCACAAGAGAACCAAAGAAGGGCGTAGTGGGAAATCAGAAGGCAAAACTTATCGCTTCTTTGATCAATTACAAGCCCTTGAAAACAACCCTGCAATTCAATCCccaacaccatcttcaaagccaccatcacaaacaacaacaccacttccagcaacaccaGTTTCAATAGTGGTCACAACTACACCATCATCAATAATGCCACCACTGCCTTTGCCACCAGTGTCCAATAACACCACTGTTCCATCAACAACCACACTCCCTATGCCTCAAGCCATTCTCAACATAGCACCATCACCAGCACTAAACATCACAACCCCTTCCTACCCTTCATCAAACCCTACATATTTCccaccacaaacaccaaaccctaccagtaacaacaacaataacaacgctcccaacaccatcaccCCTCCCTCCTTCCCCACTATCCCAATGGAGCTCTTATCGAATTCGAGTTCTTCCTCGACTTCATCAgagggaacgatggagggagggggagcgaggaggaagaggaagagaaagtggaagGACTTCTTTGAGAGGCTGATGAAGGAAGTCATAGAGAAGCAGGAGGAGCTGCAAAGGAGGTTCTTGGAAGCCATTGAGAAGAGGGAGCAAGAGCGAGTGGTGAGGGAAGACGCATGGAGAATGCAAGAGATGCAAAGGATCAACAGGGAAAGGGAGATTCTAGCACAAGAGAGGTCCATTGCTGCAGCAAAAGACGCTGCTGTTATGACATTTTTGCAAAAGATAGCCGAACATCAGCAACAAGAAATTAACCTTGATGCCGCATTGAATAACAGCAACACTATTGCTCCACAGCAACCAGTGCCacaagcaactacaacaccaacagcaacaacaccacagcaaacacaaacaacaacaGTTCCTGAGGCCCCACCAGTGCAGCCCTTGGCCCTACAACCACAGCCACAACATCAGGTGCAGCAGCAACAACAACTAGTGGTGGCTAATGTTGAAAGCAATAAAGCTGATAACAACGGGGAGAATTTGATGATTGGGGCTAGCTCTTCAAGGTGGCCAAAAGTTGAGGTAGAAGCATTGATAAACCTGAGGACTACCCTCGACACAAAGTATCAAGAAAGTGGACCAAAAGGGCCATTGTGGGAGGAGATCTCAGCCTTGATGAGGAAAATGGGGTACAACAGGAAGGCCAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTCAAGGAAAGCAACAAGAAGAGGCCTGAAGACTCCAAGACCTGTCCCTATTTTCACCAATTGGATGCTCTATACAGGGAGAAGAACAAAGTAGAGGGCCAAATGAAGCCTGAAAGCACCATGACGCCACTTATGGTGCTCCCAGAGCAACAATGGCCTCCTCAACAGCATGTGGTGCCACCTGAAGTGACCATGGGAGACGCTCAGAATGATCCCATGGACCGGCAGCACCACgaggatgaggaggaagacgatgacaaggaaattggagatgaagatgaagatgaagacgaggaaggaggtgGTAATTATGAGATAGTAGCAAGCAAGCCAGCTTCAGCTGGTGGTGATAATTCTGCTGAGTGA 1971 0.4064 MLGDSAVLGTGGGGSGDAATAISAVAASGRASDSGGGDNNNGDRSNSGDDERGRVEEGDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLAELGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALENNPAIQSPTPSSKPPSQTTTPLPATPVSIVVTTTPSSIMPPLPLPPVSNNTTVPSTTTLPMPQAILNIAPSPALNITTPSYPSSNPTYFPPQTPNPTSNNNNNNAPNTITPPSFPTIPMELLSNSSSSSTSSEGTMEGGGARRKRKRKWKDFFERLMKEVIEKQEELQRRFLEAIEKREQERVVREDAWRMQEMQRINREREILAQERSIAAAKDAAVMTFLQKIAEHQQQEINLDAALNNSNTIAPQQPVPQATTTPTATTPQQTQTTTVPEAPPVQPLALQPQPQHQVQQQQQLVVANVESNKADNNGENLMIGASSSRWPKVEVEALINLRTTLDTKYQESGPKGPLWEEISALMRKMGYNRKAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKNKVEGQMKPESTMTPLMVLPEQQWPPQQHVVPPEVTMGDAQNDPMDRQHHEDEEEDDDKEIGDEDEDEDEEGGGNYEIVASKPASAGGDNSAE 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00827 656 ProSiteProfiles Myb-like domain profile. 472 530 IPR001005 -
Cca08g00827 656 PANTHER - 1 645 - -
Cca08g00827 656 ProSiteProfiles Myb-like domain profile. 65 123 IPR001005 -
Cca08g00827 656 MobiDBLite consensus disorder prediction 588 656 - -
Cca08g00827 656 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 645 - -
Cca08g00827 656 SMART sant 470 532 IPR001005 -
Cca08g00827 656 SMART sant 63 125 IPR001005 -
Cca08g00827 656 MobiDBLite consensus disorder prediction 246 262 - -
Cca08g00827 656 CDD GT1 65 130 - -
Cca08g00827 656 MobiDBLite consensus disorder prediction 395 432 - -
Cca08g00827 656 MobiDBLite consensus disorder prediction 155 176 - -
Cca08g00827 656 MobiDBLite consensus disorder prediction 229 298 - -
Cca08g00827 656 CDD GT1 472 537 - -
Cca08g00827 656 MobiDBLite consensus disorder prediction 618 637 - -
Cca08g00827 656 Gene3D - 67 128 - -
Cca08g00827 656 Gene3D - 474 535 - -
Cca08g00827 656 MobiDBLite consensus disorder prediction 395 426 - -
Cca08g00827 656 MobiDBLite consensus disorder prediction 44 64 - -
Cca08g00827 656 Pfam Myb/SANT-like DNA-binding domain 65 151 IPR044822 -
Cca08g00827 656 Pfam Myb/SANT-like DNA-binding domain 472 559 IPR044822 -
Cca08g00827 656 Coils Coil 302 333 - -
Cca08g00827 656 MobiDBLite consensus disorder prediction 26 67 - -
Cca08g00827 656 MobiDBLite consensus disorder prediction 269 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00827 Cca-Chr8 17568346 17571800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00827 63 586 Trihelix Transcription Factor Family AT1G76890 47.505 1.09e-142 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca08g00827 Myb_DNA-bind_4 3.5e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00827 - - gmx:100804788 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00827 08 17568346 17571800 Cca02g02168 02 42045902 42048868 PCT