Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00825 ATGGAAGGGAATTTGTCACAGGGAGGTATGATTCAAGGCGGTGGTAGTTCTTTTGGGGGTTTTGATTTGCCTGGATCAATGCGGGTTCATCGGCAAGCTCAGCATCCTCATTCCATGAATCAGCATCAAACACATCCTTGCCAAGGGTCTGGGGTGCATTCCTCAGTTCATGATGGTTTTCCCCTTACGATGGGAACCTTGCAGAACTGTGATCAGACAATGTCAATGACCGAGTTTAGTCAGGGAGATAGAAGCAAAAACTCACCAAGTGATGAAGATGAACCAAGTTTTGCTGAGGAAGGTGGTGATGGTCATCATGAAGCGGGTAGAGGGAAGAAGGGGTCGCCTTGGCAGCGGGTGAAGTGGACTGATAAGATGGTGAGGCTTTTGATAACAGCTGTTTCATACATAGGCGAGGATCTAACTTCTGAAGGTGGTGGTGGAAGGAGAAAATTTACAGTCCTACAGAAAAAGGGGAAGTGGAAATCTGTTTCTAAGGTCATGGCTGAAAGAGGTTATCATGTTTCACCTCAGCAGTGTGAGGATAAGTTCAATGATCTTAATAAAAGGTACAAAAAGCTTAATGATATGCTTGGGAGGGGAACTTCTTGTCAGGTTGTTGAAAATCCTGCTCTGTTGGATGTGATAGATTATCTTTCTGAGAAAGAAAAGGATGATGTTCGAAAAATACTGAGCTCAAGACACCTGTTCTATGAGGAGATGTGTTCTTACCATAATGGTAATAGATTGCATTTACCCCATGATCCTGCATTGCAACGGTCGCTGCAGCTGGCTCTCCGAAATAGAgatgatcatgataatgatgatatcagaaggtcctatcatgatgatcatgatgaagatgatccagatgtggaaactgatgaccgtgatgaCTTTGAAGAGAATTATGTTTCTCATGCAGATAGTAGAGGACTCTATGGGGCATCAGGGGGATCTTTGAAAAGATTAAGAGTAGGGCATGGGCAAGAAGATGCTGCTACTTTTGGGAGTGCTTTAAACAGTCAAGAGCACAACAAAAGTTCGTATCCTCCGATGGTCCAATCTGATGTGAATCAAGCTTTACCTGAAAATATGAGAGCAGCTTGGTTACAGAAGCAATGGGTTGAATCTCGTTCACTTCAGTTAGAGGAGCAGAAACTACAAATTCAGGTTGAGATGTTGGAGCTAGAGAAACAAAGATTCAAGTGGCAGAAGTTTAGTAAGAAAAAAGACCGGGAGTTGGAAAAGTTAAAGCTGGAGAATGAAAGAATGAAGCTTGAAAATGAACGTATTGCTTTAGAACTAAAGCGAAAGGAAATGGGAACTGGCTTTAACTAG 1341 0.4004 MEGNLSQGGMIQGGGSSFGGFDLPGSMRVHRQAQHPHSMNQHQTHPCQGSGVHSSVHDGFPLTMGTLQNCDQTMSMTEFSQGDRSKNSPSDEDEPSFAEEGGDGHHEAGRGKKGSPWQRVKWTDKMVRLLITAVSYIGEDLTSEGGGGRRKFTVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDVIDYLSEKEKDDVRKILSSRHLFYEEMCSYHNGNRLHLPHDPALQRSLQLALRNRDDHDNDDIRRSYHDDHDEDDPDVETDDRDDFEENYVSHADSRGLYGASGGSLKRLRVGHGQEDAATFGSALNSQEHNKSSYPPMVQSDVNQALPENMRAAWLQKQWVESRSLQLEEQKLQIQVEMLELEKQRFKWQKFSKKKDRELEKLKLENERMKLENERIALELKRKEMGTGFN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00825 446 Coils Coil 378 400 - -
Cca08g00825 446 MobiDBLite consensus disorder prediction 77 117 - -
Cca08g00825 446 MobiDBLite consensus disorder prediction 33 51 - -
Cca08g00825 446 Gene3D - 122 193 - -
Cca08g00825 446 MobiDBLite consensus disorder prediction 272 297 - -
Cca08g00825 446 MobiDBLite consensus disorder prediction 272 286 - -
Cca08g00825 446 Coils Coil 408 440 - -
Cca08g00825 446 PANTHER F16F4.11 PROTEIN-RELATED 1 446 - -
Cca08g00825 446 MobiDBLite consensus disorder prediction 85 117 - -
Cca08g00825 446 PANTHER FACTOR, PUTATIVE-RELATED 1 446 - -
Cca08g00825 446 MobiDBLite consensus disorder prediction 1 54 - -
Cca08g00825 446 Pfam Myb/SANT-like DNA-binding domain 119 244 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00825 Cca-Chr8 17269221 17271122 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca08g00825 Myb_DNA-bind_4 1.3e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00825 - - gmx:100816474 688.723