Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00823 ATGGAAGGGAATTTGTCACAGGGAGGTATGATTCAAGGAGGGGCCTCTTTCGGTGGTTTTGATTTGCCCAATTCAATTCGGGTTCATCTGCAGCAAGCGCAGCAGCATCCTCATTCCATGAACCAGCATCAAACTCATCCTTGCCTAGGCTCTTCGGTGCAATCCTCATTTCAGGATGGTTTTCCACTCACGATGGGAACCTTTCAGAAGTGTGATCAGAATCAGACACCGTCACTGACCGATTTCAGTCAAGGAGACAGAAACAAAAACTCACCAAGTGATGAAGAGGAGCCAAGTTTTGCTGAGGAAGGTGTTGATGGTCACCAAGAAGCGGCTAGAGCGAAAAAGCCATCGCCTTGGCAGCGAGTGAAGTGGACTGATAAGATGGTGAAGCTTCTGATAACAGCTCTTTCTTACATAGGTGAGGATGCAGCTTCAGATGGCGGTGGCGGTGGCATTGCAAGGAGAAAATTTACAGCCCTGCAGAAGAAGGGGAAGTGGAGATCTGTTTCCAAAGCCATGGCTGAAAGGGGTCATCATGTTTCACCTCAGCAGTGTGAGGATAAGTTCAATGATCTTAACAAGAGGTACAAAAAGCTTAATGATATGCTTGGGAGGGGAACCACTTGTCAGGTTGTTGAAAACCCTGGTCTGTTGGATGTGATAGATTATCTTTCTGAGAAAGACAAGGATGATGTTCGAAAAATACTGAACTCAAGACACTTGTTCTATGAAGAGATGTGTTCTTACCATAATGGTAATAGATTGCATTTGCCTCATGATCCTGCATTGCAAAGGTCATTGCAGGTTGCTCTCCGAAATAGAGATGATCAGGACAATGATGATGTCAGAAAGTCCTCTCATGATGAAGATGAGGAAACCGATGACCTTGATGACTTTGATGAGAACTATGCTAATAATAGAGGATCTTTGAAGAGATTAAAACCAGGCCAAGGGCAAGAAGATTCTGCTGCTACTTTTGGGAGTGCTTTAAACAGTCTAGAGCATAATAAAAGTTCATTTCCTCAGATGGTCCAATCTGATGTGAGTCAAGCTTTACCTGAAAACATGAAAGCAGCTTTGTCACAGAAGCAATCGGTTGAACCTCGTGCTCTTCAGTTGGAGGAGAAGAAGCTACAAATTCAGGCTGAGTTTTTGGAGCTAGAGAAACAAAGATTCTTGTGGCAGAAGTTTAGTATAAAAAAAAACCGGGAGTTGGAGTCTATAAAGCTGGAGAATGAAAGAATGAAGCTTGAGAATGAACGCATGGCTTTAGAACTAAAGCGAAAAGAATCAAAGACAATACATGCATGA 1314 0.4323 MEGNLSQGGMIQGGASFGGFDLPNSIRVHLQQAQQHPHSMNQHQTHPCLGSSVQSSFQDGFPLTMGTFQKCDQNQTPSLTDFSQGDRNKNSPSDEEEPSFAEEGVDGHQEAARAKKPSPWQRVKWTDKMVKLLITALSYIGEDAASDGGGGGIARRKFTALQKKGKWRSVSKAMAERGHHVSPQQCEDKFNDLNKRYKKLNDMLGRGTTCQVVENPGLLDVIDYLSEKDKDDVRKILNSRHLFYEEMCSYHNGNRLHLPHDPALQRSLQVALRNRDDQDNDDVRKSSHDEDEETDDLDDFDENYANNRGSLKRLKPGQGQEDSAATFGSALNSLEHNKSSFPQMVQSDVSQALPENMKAALSQKQSVEPRALQLEEKKLQIQAEFLELEKQRFLWQKFSIKKNRELESIKLENERMKLENERMALELKRKESKTIHA 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00823 437 MobiDBLite consensus disorder prediction 88 120 - -
Cca08g00823 437 Coils Coil 371 391 - -
Cca08g00823 437 MobiDBLite consensus disorder prediction 273 324 - -
Cca08g00823 437 PANTHER F16F4.11 PROTEIN 1 432 - -
Cca08g00823 437 Pfam Myb/SANT-like DNA-binding domain 122 250 IPR044822 -
Cca08g00823 437 MobiDBLite consensus disorder prediction 68 120 - -
Cca08g00823 437 MobiDBLite consensus disorder prediction 34 53 - -
Cca08g00823 437 MobiDBLite consensus disorder prediction 273 291 - -
Cca08g00823 437 PANTHER F16F4.11 PROTEIN-RELATED 1 432 - -
Cca08g00823 437 Coils Coil 401 433 - -
Cca08g00823 437 MobiDBLite consensus disorder prediction 68 87 - -
Cca08g00823 437 Gene3D - 125 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00823 Cca-Chr8 17233708 17235209 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca08g00823 Myb_DNA-bind_4 2.3e-23 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00823 - - gmx:100812134 601.668