Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00794 ATGGCAAAGGTAAGGGATAAGCTATACGTCACCGTTCCGAGTCTTTTTCGGTGCCCGATCTCCATGGACGTCATGAGGTCCCCCGTAAGCCTCTGCACCGGCGTCACATACGATCGCACCAGCATTCAGCGATGGCTCGACTTAGGACACGACACGTGTCCCGCCACCATGCAGGTCCTTCCCTCCAAAGACTTCATTCCCAATCTCACGCTCCACCGCCTCATCCGCCTCTGGCTCCTCTCCGCCGAACCTCCCTCGCCGGAGCCCCGCCCCTCCGCCGACCACCTCCGCGCTCTCCTCCGCGCCATCGACCAAGACCTCGCCGGTGCACTCGCCAAAATCGCCGAATTCGCCAAATCCTCCGCCGACAACCGCCGCTTGCTCGCCGCCTGCACCGGCTTCGACTCCGCCGTGGTCCGCGCGCTCGCCGTAAGCGCCGCGCGGACCGACGCCTCGGAAAACGCGATCTACCTTCTGGACTCGGTTCTCCGCGAACACGGAAATTCGGAGAGAATCCGGAAGCTGATTCTCGACGCTCGTGAACAATGCTTTGACTCGATGGCTTCCGTTCTGAAAAACGGATCTCCGAAATCGAAGGTTGAAACGGTTAGGGTTTTGGAGTTTCTCGCGAGGAGCGATTTCCAAGCGAAGAAATCGGTCGCGGAAACTCGAGGTGTCGTTTCGGTGACTCACTCGGCGAAGGTGGAGCTCGTTAACTGCGGAGTCGTCGCGGCGGTTTCCGAGTTGCTGCGAGCGTGTTCCgcggcgacggcggagaggtgtctgagagtgttggcggtggcggcgacgtgcgcggaggggcgggcggcgatggcggcggaggagcattgcgcggcggcggtggtggagagggtggcgagagcgccgaagggcgcggcggaggacgcggtggcggTGCTGTGGAGTCTCTGCTGTTTGTGCGGGAGCGCGAAGGTGAGGGATGACGTGGCGAAGCGAAACGGCGTCGCGGTGATTTTGTTGGTTATGCAGAGGGGGTGGGGGGAGCACGTGAGGAGCATGTGCGTTGATTTGATTAAGGTTTTGAAGGGCGCGTGCAAGAACGGGTTGGGGTTGGGGTTGGAACTAGGATGCTATGACACCAAAACCACTCATATCAAACCATGTTAA 1149 0.51 MAKVRDKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRTSIQRWLDLGHDTCPATMQVLPSKDFIPNLTLHRLIRLWLLSAEPPSPEPRPSADHLRALLRAIDQDLAGALAKIAEFAKSSADNRRLLAACTGFDSAVVRALAVSAARTDASENAIYLLDSVLREHGNSERIRKLILDAREQCFDSMASVLKNGSPKSKVETVRVLEFLARSDFQAKKSVAETRGVVSVTHSAKVELVNCGVVAAVSELLRACSAATAERCLRVLAVAATCAEGRAAMAAEEHCAAAVVERVARAPKGAAEDAVAVLWSLCCLCGSAKVRDDVAKRNGVAVILLVMQRGWGEHVRSMCVDLIKVLKGACKNGLGLGLELGCYDTKTTHIKPC 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00794 382 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Cca08g00794 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 83 IPR013083 -
Cca08g00794 382 Pfam U-box domain 12 81 IPR003613 GO:0004842|GO:0016567
Cca08g00794 382 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 226 382 - -
Cca08g00794 382 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 230 - -
Cca08g00794 382 CDD RING-Ubox_PUB 16 58 IPR045210 -
Cca08g00794 382 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Cca08g00794 382 SUPERFAMILY RING/U-box 8 81 - -
Cca08g00794 382 SUPERFAMILY ARM repeat 118 342 IPR016024 -
Cca08g00794 382 PANTHER WDSAM1 PROTEIN 226 382 IPR045185 GO:0061630
Cca08g00794 382 PANTHER WDSAM1 PROTEIN 6 230 IPR045185 GO:0061630
Cca08g00794 382 Gene3D - 90 361 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00794 Cca-Chr8 16546498 16547724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00794 6 381 U-box Gene Family AT5G09800 37.500 1.34e-76 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00794 - - gmx:100786235 516.924