Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00792 ATGGCAGATCTTGCTAGCTACGGGAATGCCAACCGTGACATTGAACACGCATTGATTGCTTTGAAAAAGGGTGCTCAACTTCTTAAATATGGTCGTAAAGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCAATGATGAGTCATCATTAATCTGGATTACAAGTAGCGGAGAAAGAAACCTGAAGCTATCTTCTGTCTCTAGAATTATTCCCGGACAAAGAACTGCTGTTTTCCAACGTTATTTGCGTCCTGAGAAAGACTATTTGTCTTTTTCACTTATTTACAGTAACGGAAAGCGATCGCTTGATTTGATTTGTAAAGACAAAGTTGAGGCAGAAGTGTGGATTGCAGGCCTCAAAGCACTGATATTTTCTGGTCAAGGTGGTCGGTCCAAAATTGATGGATGGAGTGAAGGGGGCCTCATTCTTGATGATAGCAGAGACATAACGTCAAGTCCAAGTGAAAGTTCTGCTAGCACATCACTAGGCATCAGTTCTCCTGAAATTTCTGCAAGTCTTCCAAACACTTCACCAAAGTCGTTCAGACCTGACAAAACAACTTCTGAAAGGTCACATGTGCCACCAGACCCAACAAACATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGTGTCAGTGTTTCAAGTGCCCCCAGTACATCTAGCCATGGGTCTGCACCGGATGACTATGATGCTTTGGGGGATGTATACATATGGGGGGAGGTTATCTGTGAAAATGTTAAAGTTGGTGCCGATAAAAATGTCAATTATTTCAGCCCAAGGGCAGATGTACTTCTCCCCAGACCACTGGAATCCAATGTAGTTTTAGATGTGCATCATATAGCATGTGGTGTTAGACATGCTTCTCTTGTCACTAGGCAAGGTGAAGTTTTTACATGGGGCGAAGAATTGGGAGGACGTCTCGGCCATGGAGTTGGGAAGAATGTGGTTCAACCTTGTCTTGTTGAAGCGTTGACTACTACGACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATTCCTGTGCTGTTACAATGGCTGGGGAACTATTTACATGGGGTGATGGTACTCATTATGCTGGGCTTCTTGGTCATGGCAGAGATGTAAGTCATTGGATACCAAAGAGAATTGCAGGTCCATTAGAGGGACTTCAAATTGCATTTGTTGCTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACAGGGCAGCTGTTCACTTTTGGTGATGGAACATTCGGCGTCTTGGGCCATGGAAATAGGGAAAATGTTCCATATCCTAGAGAAGTGGAATCCTTATCAGGATTGAAAACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTATTGTAGAGGTTATTGCAACGCACTCTGGTACAAGTGTGTCATCAGGTAAATTGTTTACATGGGGCGATGGAGACAAAAATCGCCTTGGACACGGGGACAAGGAGGCACGTCTTAAACCTACTTGTGTGCCTGCACTTATTGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACGGCAGGCTTGACGACATCTGGACGTGTTTTTACTATGGGAAGTACTGTATATGGTCAGCTCGGGAATCCTCAGTCTGATGGAAAGCTTCCCTGCTTGGTTGGGGAGAAGATTGCTGGGGAACCTGTTGAAGAAATTGCATGTGGTGCATATCATGTTGCTGTATTAACTTCCAAAAATGAAGTTTATACTTGGGGAAAAGGTGCAAATGGGAGACTGGGTCATGGTGATATTGAAGATCGAAAAACACCATCTTTGGTTGAAGCATTGAAGGACAGACATGTGAAATACATTGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAGGTGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTACTTGTAGACAGGCGTTTGGCTTCACTAGAAAGAGGCACAATTGTTACAACTGTGGACTTGTCCACTGCCATTCATGCAGTTCAAGGAAAGCATTAAGAGCAGCACTAGCTCCTAATCCTGGCAAGCCATATCGTGTGTGTGATTCTTGTTATGCGAAACTGAACAAGGTTGCAGAAGCTAGCAATAATAATAGAAGGAATTCCTTGCCTCGTTTGTCGGGTGAAAACAAGGATAGGCTAGACAAGTCTGACTTAAGATTGTCCAAGGCATTAATTCCTTCTAACATGGATTTGATAAAGCAACTAGATAGTAAGGCAGCCAAGCAAGGAAAGAAAGCTGATACATTCTCGCTCGTTCGCACCTCACAACCACCTTTGCTACAGCTGAAAGATGTTGTCTTGTCCACTGCTCTTGATCTGAGACGAACAGTTCCGAGACCAGTGGTTGCACCATCAGGAGTAAGTTCCAGATCTGTATCCCCTTTCTCTAGGAGACCAAGCCCTCCTCGGTCAGCCACACCTATTCCAACAACTTCAGGACTTTCCTTCTCCAAAAGTATTGCTGACAGTTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCAGAAGTTACATGCTCAGGTCGAGAGCCTGAGACAGAGATGTGAACTGCAAGAGTTAGAGCTTCAAAGGTCAGCAAAAAAGACTCAAGAAGCCATGGCACTGGCTGCTGAGGAATCTGCTAAATCTAAAGCTGCAAAAGAAGTTATAAAGTCACTCACAGCACAGCTCAAAGATCTGGCTGAGAAGCTTCCTCCTGGAGTTTATGATACCGAGAACATTAGACCAGCTTACCTACCAAATGGTCTTGAGCCAAATGGCATCCACTATCCTGATTCAAATGGGGAGCCGCAATCCCGGGCAGAGTCAATCAGTGGCTCTAGTTTGGCCTCCATGGCCCTTGAATCCTCCCAATTGAATAGAAGTGCAGGGAATTCGCCAGGAACTTATGGAACTAATCTTCACCAGCAAATCCGGAGCCCCATGACTTCGAACGGGACCAACAGTTATCCAGATGTTAAATTGCCAAATGGTGGTGGTGTCATTCAGGCAAGCAGCGGTAGCGTGTCTGACACTGTTGATGGCAGGGATTCTGGAAATTTCCATGACGATGAGAGTGGTTTGAAATCAAGGAATGCTGCACCAGCTGCTATTAGTAATCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTACATAACACTCGTGGCACTGCGTGATGGAACAAGAGATCTGAAGCGAGTGCGCTTCAGCCGAAGGAGATTCGGAGAGCACCAAGCAGAAACATGGTGGTCGGAGAATCGGGATAAGGTATATGATAGATACAATGTTCGTAGCACAGACAAGTCTTCCAACCAAGGGGCACGTAGTTCAGGGGGTGCTGGTTCGCCTGCTTCCCAAACTTAG 3354 0.449 MADLASYGNANRDIEHALIALKKGAQLLKYGRKGKPKFCPFRLSNDESSLIWITSSGERNLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYSNGKRSLDLICKDKVEAEVWIAGLKALIFSGQGGRSKIDGWSEGGLILDDSRDITSSPSESSASTSLGISSPEISASLPNTSPKSFRPDKTTSERSHVPPDPTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENVKVGADKNVNYFSPRADVLLPRPLESNVVLDVHHIACGVRHASLVTRQGEVFTWGEELGGRLGHGVGKNVVQPCLVEALTTTTVDFVACGEFHSCAVTMAGELFTWGDGTHYAGLLGHGRDVSHWIPKRIAGPLEGLQIAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGNRENVPYPREVESLSGLKTIAVACGVWHTAAIVEVIATHSGTSVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPALIDYNFHKIACGHSLTAGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGEKIAGEPVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPSLVEALKDRHVKYIACGSNYSAAICLHRWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYAKLNKVAEASNNNRRNSLPRLSGENKDRLDKSDLRLSKALIPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQPPLLQLKDVVLSTALDLRRTVPRPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVQKLHAQVESLRQRCELQELELQRSAKKTQEAMALAAEESAKSKAAKEVIKSLTAQLKDLAEKLPPGVYDTENIRPAYLPNGLEPNGIHYPDSNGEPQSRAESISGSSLASMALESSQLNRSAGNSPGTYGTNLHQQIRSPMTSNGTNSYPDVKLPNGGGVIQASSGSVSDTVDGRDSGNFHDDESGLKSRNAAPAAISNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYDRYNVRSTDKSSNQGARSSGGAGSPASQT 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00792 1117 SUPERFAMILY FYVE/PHD zinc finger 621 694 IPR011011 -
Cca08g00792 1117 Pfam Transcription factor regulating root and shoot growth via Pin3 1036 1091 IPR013591 -
Cca08g00792 1117 Pfam Transcription factor BRX N-terminal domain 871 906 IPR027988 -
Cca08g00792 1117 MobiDBLite consensus disorder prediction 780 813 - -
Cca08g00792 1117 CDD FYVE_like_SF 630 683 - -
Cca08g00792 1117 MobiDBLite consensus disorder prediction 925 985 - -
Cca08g00792 1117 SMART fyve_4 620 688 IPR000306 GO:0046872
Cca08g00792 1117 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 440 450 IPR000408 -
Cca08g00792 1117 SUPERFAMILY RCC1/BLIP-II 233 622 IPR009091 -
Cca08g00792 1117 SUPERFAMILY PH domain-like 15 123 - -
Cca08g00792 1117 MobiDBLite consensus disorder prediction 147 205 - -
Cca08g00792 1117 Pfam FYVE zinc finger 621 687 IPR000306 GO:0046872
Cca08g00792 1117 ProSiteProfiles BRX domain profile. 1037 1092 IPR013591 -
Cca08g00792 1117 CDD PH_PLC_plant-like 12 124 - -
Cca08g00792 1117 Gene3D - 197 453 IPR009091 -
Cca08g00792 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 402 453 IPR000408 -
Cca08g00792 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 569 620 IPR000408 -
Cca08g00792 1117 Coils Coil 820 861 - -
Cca08g00792 1117 Pfam Pleckstrin homology domain 19 123 IPR001849 -
Cca08g00792 1117 Gene3D - 13 128 IPR011993 -
Cca08g00792 1117 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 625 687 IPR017455 -
Cca08g00792 1117 MobiDBLite consensus disorder prediction 913 1025 - -
Cca08g00792 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 295 346 IPR000408 -
Cca08g00792 1117 PRINTS Chromosome condensation regulator RCC1 signature 297 313 IPR000408 -
Cca08g00792 1117 PRINTS Chromosome condensation regulator RCC1 signature 347 363 IPR000408 -
Cca08g00792 1117 PRINTS Chromosome condensation regulator RCC1 signature 388 404 IPR000408 -
Cca08g00792 1117 PRINTS Chromosome condensation regulator RCC1 signature 404 418 IPR000408 -
Cca08g00792 1117 PRINTS Chromosome condensation regulator RCC1 signature 506 524 IPR000408 -
Cca08g00792 1117 PRINTS Chromosome condensation regulator RCC1 signature 564 585 IPR000408 -
Cca08g00792 1117 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1098 - -
Cca08g00792 1117 MobiDBLite consensus disorder prediction 147 182 - -
Cca08g00792 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 517 568 IPR000408 -
Cca08g00792 1117 MobiDBLite consensus disorder prediction 994 1008 - -
Cca08g00792 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 234 294 IPR000408 -
Cca08g00792 1117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 694 IPR013083 -
Cca08g00792 1117 Coils Coil 876 896 - -
Cca08g00792 1117 MobiDBLite consensus disorder prediction 1094 1117 - -
Cca08g00792 1117 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1098 - -
Cca08g00792 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 347 401 IPR000408 -
Cca08g00792 1117 MobiDBLite consensus disorder prediction 1093 1117 - -
Cca08g00792 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 516 565 IPR000408 -
Cca08g00792 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 570 617 IPR000408 -
Cca08g00792 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 295 343 IPR000408 -
Cca08g00792 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 402 450 IPR000408 -
Cca08g00792 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 347 398 IPR000408 -
Cca08g00792 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 464 511 IPR000408 -
Cca08g00792 1117 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 388 398 IPR000408 -
Cca08g00792 1117 Gene3D - 454 633 IPR009091 -
Cca08g00792 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 465 516 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00792 Cca-Chr8 16476694 16488223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00792 880 1102 Major Intrinsic Protein MIP AT1G31880 29.596 3.09e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00792 - - gmx:100805364 1953.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00792 08 16476694 16488223 Cca02g02183 02 42318223 42326415 PCT