Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00790 ATGGAGGCGAGAGTGTCCTCCTCTCTGGGCCTCCCCTCCCCAAAACCCCACCAAATGTCCCTCTCAACCCTCACCGACTTCCCCTCTCTCCTCACACACTTCTCCCTCCAAACCCAATCCCCCCCCTTCGCCTCCACCACCTCCCCCCACCCCCCAAACTGGGCCCGGCCCCCCCCCAAGGCCCACCCGCCCCTCTTCAAATCCCTCTCCCTCCTCGACCGCGCCCTCATCGGGGCCGCCGCAGGGGGCCTCGCCGGCGCCTTCACCTACGTCTGCCTCCTCCCCCTCGACACCATCAAAACCAAGATGCAAACCAAAGGCGCCGCCAAAATTTACAAAAACACCCTCGACGCTGTCGCCAAAACCTTCCACACCGGCGGCCTCCTCGCCTTCTACAGCGGAATCTCCGCCGTCATTGTCGGCTCCACCGCCTCCTCCGCCGTCTACTTCGGCACCTGCGAGTTCGGCAAGTCGTTCCTCGCCAAAATCCCCGCCTTCCCCGCCGTCTTGATCCCCCCCGCCGCCGGCGCCATGGGCAACGTGGTCTCCTCCGCCATCATGGTCCCCAAGGAGCTCATCACGCAGCGGATGCAGGCCGGCGCCGCCGCCGGCCGCTCCTGGCGCGTCCTCGTCCAGATTCTCCAAAACGACGGCGTCATGGGCCTCTACGCCGGGTACTCCGCGACGCTCCTCCGCAACCTCCCCGCCGGCGTCCTGAGCTACTCGTCCTTCGAGTATCTGAAATCCGCGGTTCTGAAAACGACGGAACAGAACCACCTGGAACCGGTTCAGAGCGTCCTCTGTGGGGCCCTCGCGGGTGCCATATCCGCCTCGCTCACGACTCCTCTGGACGTGGTGAAGACGCGCTTGATGACGCAGGTGCGCGGAGAGGGCGTGGGGAAGGTTGCTGCGGTCATGTACGACGGCGTTTCGGCCACCGTGAAGCAGATTCTTAAGGAGGAAGGGTGGGTGGGGCTGACACGTGGCATGGGGCCAAGGGTTTTGCATAGCGCGTGCTTCTCCGCGTTGGGCTACTTCGCTTTCGAGACGGCGAGGCTGGGGATTATGAGGGAGTATCTTCGGAGGAAGGAGTTGAGTGAAAGGGAGGCTCCCGTTTCTGCTTCCGCTGGCTGA 1134 0.6429 MEARVSSSLGLPSPKPHQMSLSTLTDFPSLLTHFSLQTQSPPFASTTSPHPPNWARPPPKAHPPLFKSLSLLDRALIGAAAGGLAGAFTYVCLLPLDTIKTKMQTKGAAKIYKNTLDAVAKTFHTGGLLAFYSGISAVIVGSTASSAVYFGTCEFGKSFLAKIPAFPAVLIPPAAGAMGNVVSSAIMVPKELITQRMQAGAAAGRSWRVLVQILQNDGVMGLYAGYSATLLRNLPAGVLSYSSFEYLKSAVLKTTEQNHLEPVQSVLCGALAGAISASLTTPLDVVKTRLMTQVRGEGVGKVAAVMYDGVSATVKQILKEEGWVGLTRGMGPRVLHSACFSALGYFAFETARLGIMREYLRRKELSEREAPVSASAG 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00790 377 Gene3D Mitochondrial carrier domain 17 204 IPR023395 -
Cca08g00790 377 ProSiteProfiles Solute carrier (Solcar) repeat profile. 167 250 IPR018108 -
Cca08g00790 377 Pfam Mitochondrial carrier protein 174 253 IPR018108 -
Cca08g00790 377 Pfam Mitochondrial carrier protein 259 355 IPR018108 -
Cca08g00790 377 Pfam Mitochondrial carrier protein 79 162 IPR018108 -
Cca08g00790 377 SUPERFAMILY Mitochondrial carrier 76 349 IPR023395 -
Cca08g00790 377 MobiDBLite consensus disorder prediction 39 59 - -
Cca08g00790 377 MobiDBLite consensus disorder prediction 45 59 - -
Cca08g00790 377 ProSiteProfiles Solute carrier (Solcar) repeat profile. 73 159 IPR018108 -
Cca08g00790 377 Gene3D Mitochondrial carrier domain 205 377 IPR023395 -
Cca08g00790 377 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 22 368 - -
Cca08g00790 377 ProSiteProfiles Solute carrier (Solcar) repeat profile. 260 354 IPR018108 -
Cca08g00790 377 PANTHER PROTEIN MITOFERRINLIKE 1, CHLOROPLASTIC 22 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00790 Cca-Chr8 15911942 15917967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00790 152 360 Chloroplast and Mitochondria Gene Families AT2G30160 26.316 6.21e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00790 K15111 - gmx:100805903 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00790 08 15911942 15917967 Cca08g00790 08 15911942 15917967 ECH