Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00778 atgCTATGTGCTTTTTCCATTTCTCATGCAATTACTAGCAAAGAAATGTCTCTGAAGGCTACTTTAGACGTTCTATCATTTCCAGGAGCAATTTTACTACTCTCATGCACTTATAAAACATGCAAATGTAAAGACACTAATGAAGAAAATGATGAAAGACATTATGCTCCTTTAAATGGCCAGTTCAATGAAGTTGATCCTATTAGCTACGTAACCCCATTTGCCAAAGCTGGATTCTTTAGTAGGATGTCATTTTGGTGGTTGAATCCATTGATGAAAAGGGGTCAAGATAAAACACTTGAGGATGAGGATATCCCAAAGTTGCGGGAGTTAGATCGAGCAGAAACTTGTTACCTTTTGTTTGTAGAACAATTGAACAAACAGAAACAAAAGGAACCGTCATCACTGTCAATTTTGTGGGTAATAATTTTGTGTCACTGGAGAGAGATTTTGATATCAGGGATTTTTGCATTGTTCAAAGTACTCTCTCAATCTGCTGGTCCTTTACTTCTAAATGCCTTTATATTGGTTTCTGAGGGTAAAGGAAGTTTCAAATATGAAGGTTATGTATTGGCCATATCACTTTTCTTTATAAAGATCATAGAATCCCAATCACAAAGGCAATGGTATTTCCGCAGTAGACTTGTTGGGATGAATGTTAAGTCACTGCTTACTACATGCATTTATAAAAAGCTATTGAGGTTATCCAATGTAGCTAAATTGACACACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAATTCCCATTTTGGTTTCACCAGACATGGACTACAAGCATCCAACTGTGTATTGCATTAGTAATACTTTTCCGTGCTATTGGGCTAGCAACAATTGCCTCATTGGTTGTGATAGTTCTTACTATGCTTTGCAATACTCCACTAGCAAAGTTACAACACAAGTTTCAGACCAAACTCATGGTGGCTCAAGATGAGAGATTGAAGGCTAGTTCCGAGGCTATTGTGAATATGAAAGTGCTAAAACTATATGCATGGGAAAGTCATTATAAAAATGCTATAGAAAAGTTGAGGAATGTGGAACTCAAATTTTTAGCTTCAGTGCAATTAAGAAGGGCATACAATATATTTCTCTTTTGGAGTGCACCTATTTTGGTCTCTGCTGTTTCCTTTTGGGCATGTTACTTTCTGAACATTCCTTTACATGCAAATAATGTATTTACCTTTGTGGCTACTTTACGCCTTGTGCAAGAGCCAATAACAGCCATCCCAGATGTTGTTGGGGCAGTCATTCAAGCAAAAGTTGCATTTGCTCGGATTGTTAAATTCCTCAAAGCATCTGAACTGGAAAGTGAAAATTTCAAGAACAAGTGTTTTGATGATAATATTAGAGGCTCAATTTTAATCGAATCTGCTGACTTTTCATGGGAAGGTAATGCATCAAAGCCTACTTTGAGGAACATAAACTTGGAGGTTAAACAAAGGCAAAAGGTGGCTATTTGTGGACAAGTTGGCTCAGGAAAATCAACCCTCTTAGCAACAATTCTTGGAGAAGTTCCTAAGACAAAGGGAAATATTGAAATTTATGGGAAGTTTGCATATGTTTCGCAAACAGCATGGATACAGACGGGTACAATACGGGAAAATATTTTGTTTGGATCTGATTTGGACATGCATAGATATCAAGAAACACTTCATAGATCTTCACTAGTTAAGGACATTGAGCTGTTTCCCCATGGTGACTTAACTGAAATAGGTGAGAGAGGAACTAACTTGAGTGGAGGTCAAAAGCAGCGAATTCAACTTGCTCGTGCTCTTTATCAGAATGCTGATGTATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCAAATACAGCCACAAATTTGTTTAATGAATACATCATGGAAGGACTAAAAGGGAAGACTGTCTTACTCGTGACTCATCAAGTTGACTTTCTCCCAGCGTTTGATTCTGTTTTGTTCATGTCAGATGGAGAAATCCTACAGCAAGCTCCTTATCACCATATTTTGAGCTCAAGCCAAGAATTCCAAGACCTTGTCAATGCTCACAAAGAAACTTCTAATTCTAATCAATTTGTGAGTGTTACATCTTCCCAGAGAAATTTGACTTCTGATAGAGAGATTACACAAGCTTTCATGGAGAAGCAGTTTAAAGCAACAAATAGAGATCAATTAATTAAGCAAGAAGAGAGAGAGACAGGGGACACAGGGTTGAAGCCTTACAGGCAGTATCTGAATCAGATGAAAGGCTATATATACTTTTCTATGGTTTCCCTTTGTTACATTGCCTTCGTTATTTGCCAGATATTGCAAAACTCATGGATGGCAGCAAATGTTGACAATCCCTATGTCAGCTCGTTACAATTGATTCTTGTTTACATCTTGATTGGAGCAATTTCAACTATTTTCTTACTGATCAGATGTCTAACTACAGTTTCCTTGGGTATTAAATCATCACAAAATTTATTTGTACAGTTGATGGATTCACTTTTTCGTGCACCAATGTCATTTTATGACTCTACACCGATGGGAAGAATACTTAGCAGAGTCTCATCAGATTTGAGCATTGTGGATCTCGATATACCCTTCAGCCTTGGTATATCTGTTGGAGGACCTATAATTTGTTGTTCTAATCTTTTAGTTTTAGCAATTGTCACTTGGCAAGTCTTGGTTGTCTCTATACCAATGGTGTACATTGCGATTTGCTTGCAGAGATACTTTTTTGCCTCTGCCAAAGAAGTGATGCGGATGAATGGCACAACAAAATCCTTTGTAGCTAATCATTTTGCTGAAACTGTTGCTGGAGTTGTGTTAAGAAAAACCAGAACAGAGAAGTTGAAACAGAAAAAACTGGAACAGAGAAGTTGA 2889 0.3738 MLCAFSISHAITSKEMSLKATLDVLSFPGAILLLSCTYKTCKCKDTNEENDERHYAPLNGQFNEVDPISYVTPFAKAGFFSRMSFWWLNPLMKRGQDKTLEDEDIPKLRELDRAETCYLLFVEQLNKQKQKEPSSLSILWVIILCHWREILISGIFALFKVLSQSAGPLLLNAFILVSEGKGSFKYEGYVLAISLFFIKIIESQSQRQWYFRSRLVGMNVKSLLTTCIYKKLLRLSNVAKLTHSGGEIMNYVTVDAYRIGEFPFWFHQTWTTSIQLCIALVILFRAIGLATIASLVVIVLTMLCNTPLAKLQHKFQTKLMVAQDERLKASSEAIVNMKVLKLYAWESHYKNAIEKLRNVELKFLASVQLRRAYNIFLFWSAPILVSAVSFWACYFLNIPLHANNVFTFVATLRLVQEPITAIPDVVGAVIQAKVAFARIVKFLKASELESENFKNKCFDDNIRGSILIESADFSWEGNASKPTLRNINLEVKQRQKVAICGQVGSGKSTLLATILGEVPKTKGNIEIYGKFAYVSQTAWIQTGTIRENILFGSDLDMHRYQETLHRSSLVKDIELFPHGDLTEIGERGTNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDANTATNLFNEYIMEGLKGKTVLLVTHQVDFLPAFDSVLFMSDGEILQQAPYHHILSSSQEFQDLVNAHKETSNSNQFVSVTSSQRNLTSDREITQAFMEKQFKATNRDQLIKQEERETGDTGLKPYRQYLNQMKGYIYFSMVSLCYIAFVICQILQNSWMAANVDNPYVSSLQLILVYILIGAISTIFLLIRCLTTVSLGIKSSQNLFVQLMDSLFRAPMSFYDSTPMGRILSRVSSDLSIVDLDIPFSLGISVGGPIICCSNLLVLAIVTWQVLVVSIPMVYIAICLQRYFFASAKEVMRMNGTTKSFVANHFAETVAGVVLRKTRTEKLKQKKLEQRS 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00778 962 CDD ABC_6TM_ABCC_D1 152 439 IPR044746 GO:0140359
Cca08g00778 962 SUPERFAMILY ABC transporter transmembrane region 746 943 IPR036640 GO:0005524|GO:0016021
Cca08g00778 962 Gene3D - 461 695 IPR027417 -
Cca08g00778 962 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 468 689 IPR003439 GO:0005524
Cca08g00778 962 SUPERFAMILY ABC transporter transmembrane region 139 439 IPR036640 GO:0005524|GO:0016021
Cca08g00778 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 689 IPR027417 -
Cca08g00778 962 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 1 947 - -
Cca08g00778 962 Gene3D ABC transporter type 1, transmembrane domain 122 447 IPR036640 GO:0005524|GO:0016021
Cca08g00778 962 Gene3D ABC transporter type 1, transmembrane domain 722 948 IPR036640 GO:0005524|GO:0016021
Cca08g00778 962 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 766 943 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g00778 962 ProSitePatterns ABC transporters family signature. 591 605 IPR017871 GO:0005524
Cca08g00778 962 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 151 431 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g00778 962 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 947 - -
Cca08g00778 962 CDD ABCC_MRP_domain1 466 666 - -
Cca08g00778 962 SMART AAA_5 493 666 IPR003593 -
Cca08g00778 962 Pfam ABC transporter 484 618 IPR003439 GO:0005524
Cca08g00778 962 Pfam ABC transporter transmembrane region 783 943 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g00778 962 Pfam ABC transporter transmembrane region 151 414 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00778 Cca-Chr8 15326912 15331121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00778 287 717 Calmodulin-binding Proteins AT2G36910 24.561 2.42e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00778 K05666 - ccaj:109790960 1893.63