Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00777 ATGTCATTTTGGTGGTTGAATCCATTGATGAAAAGGGGTCAAGATAAAACACTTGAGGATGAGGATATCCCAAAGTTGCGGGAGTTAGATCGAGCAGAAACTTGTTACCTTTTGTTTGTAGAACAATTGAACAAACAGAAACAAAAGGAACCGTCATCACTGTCAATTTTGTGGGTAATAATTTTGTGTCACTGGAGAGAGATTTTGATATCAGGGATTTTTGCATTGTTCAAAGTACTCTCTCAATCTGCTGGTCCTTTACTTCTAAATGCCTTTATATTGGTTTCTGAGGGTAAAGGAAGTTTCAAATATGAAGGTTATGTATTGGCCATATCACTTTTCTTTATAAAGATCATAGAATCCCAATCACAAAGGCAATGGTATTTCCGCAGTAGACTTGTTGGGATGAATGTTAAGTCACTGCTTACTACATGCATTTATAAAAAGCTATTGAGGTTATCCAATGTAGCTAAATTGACACACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAATTCCCATTTTGGTTTCACCAGACATGGACTACAAGCATCCAACTGTGTATTGCATTAGTAATACTTTTCCGTGCTATTGGGCTAGCAACAATTGCCTCATTGGTTGTGATAGTTCTTACTATGCTTTGCAATACTCCACTAGCAAAGTTACAACACAAGTTTCAGACCAAACTCATGGTGGCTCAAGATGAGAGATTGAAGGCTAGTTCCGAGGCTATTGTGAATATGAAAGTGCTAAAACTATATGCATGGGAAAGTCATTATAAAAATGCTATAGAAAAGTTGAGGAATGTGGAACTCAAATTTTTAGCTTCAGTGCAATTAAGAAGGGCATACAATATATTTCTCTTTTGGAGTGCACCTATTTTGGTCTCTGCTGTTTCCTTTTGGGCATGTTACTTTCTGAACATTCCTTTACATGCAAATAATGTATTTACCTTTGTGGCTACTTTACGCCTTGTGCAAGAGCCAATAACAGCCATCCCAGATGTTGTTGGGGCAGTCATTCAAGCAAAAGTTGCATTTGCTCGGATTGTTAAATTCCTCAAAGCATCTGAACTGGAAAGTGAAAATTTCAAGAACAAGTGTTTTGATGATAATATTAGAGGCTCAATTTTAATCGAATCTGCTGACTTTTCATGGGAAGGTAATGCATCAAAGCCTACTTTGAGGAACATAAACTTGGAGGTTAAACAAAGGCAAAAGGTGGCTATTTGTGGACAAGTTGGCTCAGGAAAATCAACCCTCTTAGCAACAATTCTTGGAGAAGTTCCTAAGACAAAGGGAAATATTGAAATTTATGGGAAGTTTGCATATGTTTCGCAAACAGCATGGATACAGACGGGTACAATACGGGAAAATATTTTGTTTGGATCTGATTTGGACATGCATAGATATCAAGAAACACTTCATAGATCTTCACTAGTTAAGGACATTGAGTTGTTTCCCCATGGTGACTTAACTGAAATAGGTGAGAGAGGAATTAACTTGAGTGGAGGTCAAAAGCAGCGAATTCAACTTGCTCGTGCTCTTTATCAGAATGCTGATGTATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCAAATACAGCCACAAATTTGTTTAATGTAATGACATCTTCCTTTCTTCACATGCTGCTTGTATATTTGTCATTCTTTACTGAAAGATATGGAGAAATCCTACAGCAAGCTCCTTATCACCATATTTTGAGCTCAAGCCAAGAATTCCAAGACCTTGTCAATGCTCACAAAGAAACTTCTAATTCTAATCAATTTGTGAGTGTTACATCTTCCCAGAGAAATTTGACTTCTGATAGAGAGATTACACAAGCTTTCATGGAGAAGCAGTTTAAAGCAACAAATAGAGATCAATTAATTAAGCAAGAAGAGAGAGAGACAGGGGACACAGGGTTGAAGCCTTACAGGCAGTATCTGAATCAGATGAAAGGCTATATATACTTTTCTATGGTTTCCCTTTGTTACATTGCCTTCGTTATTTGCCAGATATTGCAAAACTCATGGATGGCAGCAAATGTTGACAATCCCTATGTCAGCTCGTTACAATTGATTCTTGTTTACATCTTGATTGGAGCAATTTCAACTATTTTCTTACTGATCAGATGTCTAACTACAGTTTCCTTGGGTATTAAATCATCACAAAATTTATTTGTACAGTTGATGGATTCACTTTTTCGTGCACCAATGTCATTTTATGACTCTACACCGATGGGAAGAATACTTAGCAGAGTCTCATCAGATTTGAGCATTGTGGATCTCGATATACCCTTCAGCCTTGGTATATCTGTTGGAGGACCTATAATTTGTTGTTCTAATCTTTTAGTTTTAGCAATTGTCACTTGGCAAGTCTTGGTTGTCTCTATACCAATGGTGTACATTGCGATTTGCTTGCAGAGATACTTTTTTGCCTCTGCCAAAGAAGTGATGCGGATGAATGGCACAACAAAATCCTTTGTAGCTAATCATTTTGCTGAAACTGTTGCTGGAGTTGTGACAATAAGGGCTTTTGAGGAGGAAGCTCGTTTCTTTGATAAGAATCTTGATCTAATTGATATCAATGCCAGTTCTTTCTTCCATAGTTTTTCTTCAAATGAATGGTTGATCCAACGCTTAGAAATGGTCTCTGCAGTAGTTCTCGCCTCTGCAGCGCTTTGCATGGTTATGCTTCCACCCGGGACTTTCGCCCCTGGATTTATTGGCATGGCTCTCTCTTATGGATTTTCCCTAAACGCTTCTCTAGTAGTTTCAATTCAAAGTCAATGCAATCTAGCAAATTATATAATATCTGTAGAAAGGATAAATCAATATATGCATATTCCAAGTGAGGCCGAAGAAGTAATAGAAGGAAATCGCCCTCCTTTGAATTGGCCAGTTGCAGGAAAAGTGGAAATACATGATCTGCAGATAAGATATAGGCTTGAAGGGCCACTTGTACTCCATGGTATCACTTGCACATTTGTAGGAGGGCACAAGATTGGCATTGTTGGCAGGACAGGCAGTGGGAAATCCACTCTTATAGGTGCTTTATTTCGTCTTGTGGAGCCAGCTGGTGGAAAAATTGTAGTTGATGGCATAGACATCTCTTCTATTGGCCTTCATGATTTGAGGTCACGTTTTTGTATTATACCTCAGGATCCTACCCTTTTCAATGGAACAGTTAGATATAATTTGGACCCTTTATCTCAACATTCTGATCAAGAGATATGGGAGGTTCTTGGTAAATGTCAATTGCGAGAAACTGTTCAAGAGAAAGAAGATGGCCTCAACTCCTCAGTTGTTGGAGAGGGATCAAACTGGAGCATGGGACAAAGACAACTATTCTGTTTGGGGCGTGCTCTTTTGAGAAGAAGTAAAATATTGGTGTTGGATGAAGCAACTGCATCAATTGATAACATAACTGATATGATTCTGCAGAAAACCATTAGGACTGAGTTTGCAGATTGCACAGTGATCACAGTAGCTCACAGAATACCAACCGTGATGGATTGTACAATGGTTCTTTCAATCAGTGAAGGAAATTTGGTGGAATATGATGAACCAATGAGCCTAATGAAGACTGAAGGATCACTATTCAGGCAGCTTGTCAATGAATACTACTCTCATTTTCAATCTACTATAGAATCACGTTGA 3687 0.3824 MSFWWLNPLMKRGQDKTLEDEDIPKLRELDRAETCYLLFVEQLNKQKQKEPSSLSILWVIILCHWREILISGIFALFKVLSQSAGPLLLNAFILVSEGKGSFKYEGYVLAISLFFIKIIESQSQRQWYFRSRLVGMNVKSLLTTCIYKKLLRLSNVAKLTHSGGEIMNYVTVDAYRIGEFPFWFHQTWTTSIQLCIALVILFRAIGLATIASLVVIVLTMLCNTPLAKLQHKFQTKLMVAQDERLKASSEAIVNMKVLKLYAWESHYKNAIEKLRNVELKFLASVQLRRAYNIFLFWSAPILVSAVSFWACYFLNIPLHANNVFTFVATLRLVQEPITAIPDVVGAVIQAKVAFARIVKFLKASELESENFKNKCFDDNIRGSILIESADFSWEGNASKPTLRNINLEVKQRQKVAICGQVGSGKSTLLATILGEVPKTKGNIEIYGKFAYVSQTAWIQTGTIRENILFGSDLDMHRYQETLHRSSLVKDIELFPHGDLTEIGERGINLSGGQKQRIQLARALYQNADVYLLDDPFSAVDANTATNLFNVMTSSFLHMLLVYLSFFTERYGEILQQAPYHHILSSSQEFQDLVNAHKETSNSNQFVSVTSSQRNLTSDREITQAFMEKQFKATNRDQLIKQEERETGDTGLKPYRQYLNQMKGYIYFSMVSLCYIAFVICQILQNSWMAANVDNPYVSSLQLILVYILIGAISTIFLLIRCLTTVSLGIKSSQNLFVQLMDSLFRAPMSFYDSTPMGRILSRVSSDLSIVDLDIPFSLGISVGGPIICCSNLLVLAIVTWQVLVVSIPMVYIAICLQRYFFASAKEVMRMNGTTKSFVANHFAETVAGVVTIRAFEEEARFFDKNLDLIDINASSFFHSFSSNEWLIQRLEMVSAVVLASAALCMVMLPPGTFAPGFIGMALSYGFSLNASLVVSIQSQCNLANYIISVERINQYMHIPSEAEEVIEGNRPPLNWPVAGKVEIHDLQIRYRLEGPLVLHGITCTFVGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFCIIPQDPTLFNGTVRYNLDPLSQHSDQEIWEVLGKCQLRETVQEKEDGLNSSVVGEGSNWSMGQRQLFCLGRALLRRSKILVLDEATASIDNITDMILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISEGNLVEYDEPMSLMKTEGSLFRQLVNEYYSHFQSTIESR 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00777 1228 Pfam ABC transporter 402 536 IPR003439 GO:0005524
Cca08g00777 1228 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 672 944 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g00777 1228 CDD ABC_6TM_ABCC_D2 667 956 IPR044726 GO:0140359
Cca08g00777 1228 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 386 610 IPR003439 GO:0005524
Cca08g00777 1228 CDD ABCC_MRP_domain1 384 549 - -
Cca08g00777 1228 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 2 1224 - -
Cca08g00777 1228 SUPERFAMILY ABC transporter transmembrane region 652 961 IPR036640 GO:0005524|GO:0016021
Cca08g00777 1228 CDD ABCC_MRP_domain2 979 1199 - -
Cca08g00777 1228 Gene3D - 965 1217 IPR027417 -
Cca08g00777 1228 SMART AAA_5 1007 1190 IPR003593 -
Cca08g00777 1228 SMART AAA_5 411 630 IPR003593 -
Cca08g00777 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 971 1214 IPR027417 -
Cca08g00777 1228 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 69 349 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g00777 1228 Gene3D ABC transporter type 1, transmembrane domain 40 365 IPR036640 GO:0005524|GO:0016021
Cca08g00777 1228 Gene3D ABC transporter type 1, transmembrane domain 628 963 IPR036640 GO:0005524|GO:0016021
Cca08g00777 1228 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 981 1215 IPR003439 GO:0005524
Cca08g00777 1228 CDD ABC_6TM_ABCC_D1 70 357 IPR044746 GO:0140359
Cca08g00777 1228 SUPERFAMILY ABC transporter transmembrane region 57 357 IPR036640 GO:0005524|GO:0016021
Cca08g00777 1228 Pfam ABC transporter transmembrane region 687 904 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g00777 1228 Pfam ABC transporter transmembrane region 69 332 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g00777 1228 Gene3D - 379 601 IPR027417 -
Cca08g00777 1228 Pfam ABC transporter 998 1146 IPR003439 GO:0005524
Cca08g00777 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 594 IPR027417 -
Cca08g00777 1228 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 1224 - -
Cca08g00777 1228 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00777 Cca-Chr8 15316554 15326085 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00777 233 543 Calmodulin-binding Proteins AT2G36910 26.801 2.12e-21 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00777 K05666 - gmx:100786761 2098.55