Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00774 ATGCGCATGAATGGCACAACAAAGTCCTTTGTAGCTAATCATGTAGCTGAAACTACTGCTGGAGTTGTGACAATAAGAGCCTTTGAAGAAGAAGATCGTTTCTTTGAGAAGAATCTTGATTTAATTGACATCAATGCTAGTCCTTTCTTCCATAGTTTTGCCTCAAATGAGTGGCTGATCCAAAGATTAGAAATAGTTAGTGCAGTACTTCTTGCCTCCACAGCACTATGCATGGTTATGCTTCCACCTGGGACTTTTGCCTCTGGATTCATTGGCATGGCTCTCTCTTATGGCCTTACTAAATGCTCAGCTATAATTGAAGGAAATCGTCCACCTTCGAATTGGCCAGACGTTGGTAAAGTAGAACTAAATGACTTGCAGATACGATACAGGCCTGATGGACCACTTATACTCCATGGAATCACATGCACATTCAAAGCAGGCCACAAGATTGGAATTGTTGGCAGGACAGGCAGTGGGAAGTCCACTCTTATAGCTGCTTTATTTCGTCTTGTGGAGCCAGCAGGTGGAAAAATTGTAGTTGATGGCATAGACATCACTTCTATTGGCCTTCATGATTTGAGGTCACGTTTTGGTGTTATACCTCAGGATCCTACCCTTTTTAATGGGACAGTTAGATTCAATTTGGACCCTCTATCTCAACACTCTGATCAAGACATATGGGAGGTTCTCGGGAAGTGTCAGTTGCGAGAAGCTATCCAAGAGAAAGAAGAAGGATTAAACTCATCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAATTATTTTGTTTGGGGCGTGCGCTTCTAAGGAGAAGTAGGATATTAGTGTTGGATGAAGCAACTGCATCAATCGACAATGCAACTGATTTGATTCTGCAGAAAACCATTAGGACTGAGTTTGCCGATTGTACTGTGATCACAGTAGCACACAGGATACCAACTGTGATGGATTGCACTATGGTTCTTTCAATAAGTGATGGCAAATTAGTGGAGTATGATGAACCAATGAGCTTGATGAAGAATGAAGGATCGCTATTCAAGCAGCTTGTCAATGAATCTGGTCTCATTTTCAATCTGCAGAATCACATTAATGCTGCAAAATGTTGCTTTTTTGACAACTTTGTTGTCTATCTTACCTAG 1152 0.4149 MRMNGTTKSFVANHVAETTAGVVTIRAFEEEDRFFEKNLDLIDINASPFFHSFASNEWLIQRLEIVSAVLLASTALCMVMLPPGTFASGFIGMALSYGLTKCSAIIEGNRPPSNWPDVGKVELNDLQIRYRPDGPLILHGITCTFKAGHKIGIVGRTGSGKSTLIAALFRLVEPAGGKIVVDGIDITSIGLHDLRSRFGVIPQDPTLFNGTVRFNLDPLSQHSDQDIWEVLGKCQLREAIQEKEEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLVEYDEPMSLMKNEGSLFKQLVNESGLIFNLQNHINAAKCCFFDNFVVYLT 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00774 383 SUPERFAMILY ABC transporter transmembrane region 5 99 IPR036640 GO:0005524|GO:0016021
Cca08g00774 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 352 IPR027417 -
Cca08g00774 383 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 102 - -
Cca08g00774 383 Pfam ABC transporter 138 286 IPR003439 GO:0005524
Cca08g00774 383 CDD ABCC_MRP_domain2 119 339 - -
Cca08g00774 383 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 103 357 - -
Cca08g00774 383 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 103 357 - -
Cca08g00774 383 Gene3D - 106 357 IPR027417 -
Cca08g00774 383 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 1 102 - -
Cca08g00774 383 Gene3D ABC transporter type 1, transmembrane domain 1 105 IPR036640 GO:0005524|GO:0016021
Cca08g00774 383 SMART AAA_5 147 339 IPR003593 -
Cca08g00774 383 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 121 355 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00774 Cca-Chr8 15247599 15250075 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00774 119 355 Calmodulin-binding Proteins AT2G36910 30.864 1.79e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00774 K05666 - gmx:100787314 648.277