Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00770 ATGGAGGAATTTTGGAGCATGTTATGTGGAGATTCTGATTGTCCTGGGAATGGAGGAAAGCCTTTCTGCTATGATTTCAATATTTTGAAAGATCCTTCTACATGCACCAACCATTTCTTCACCATTTGCTTTGATGTGTTACTAATGATCATGCTGGCATTCATTTTGATCCAGAAGTCTTTGTTCAGGCAATTTCAGGGTACGGTGGGGAGATATTCAAACTTGCAGCTAATTTCTGCTATAACCAATGGTTCTCTGGGGTTGTTGCATTTGTGCTTGAGCATTTGGAATTTTGAGAAGTTAAGGGAAAGCCACACAATTATCCCTCTTCATTGGTGGTTGCTAGAACTTTCTCAAGGACTCAGGTGCTTGTTAGTAGGCTTAAGTGTAAGTCTTCAGTTGAAACAACTTACAAGATCTTGGTTGTGGTTGTTTTCTCTTCTTACACTATTTGTTTCCACTATTTTCTGTGTTTTATCCATGTCTTATGCTATTAGTAGCAGAGAATTGTCTTTCAAGGCAGCTTTAGATGTTCTGTCTTTTCCAGGGGCATTCTTACTACTCTTGTGCACTTATAAAGTGTATAAATGTGACGACACTAATGGAGAATTTGATGAAGGCCTTTATGACCCTTTAAATGGCCACTTTAATGATGTTGATCCTGTTAACTTTGTAACCCCTTTTGCAAAAGCTGGATTGCTTAGTAGGATGTTATTTTGGTGGTTGAATCCATTGATGAAAAGGGGCCAAGAGAAAACACTTCAGGATGAGGATATCCCGAAGTTGCAAGAATCAGATCAAGCAGAATGTTGCTATTTGTCGTTTGTAGAACAATTGAACAAACAAAAAGGAAAAGAATCATTGTCACAGTCATCAATTTTGTGGACAATAATTTTGTGCCACAGGAGAGGGATTTTAATTTCAGGAATTTTTGCATTGCTCAAGGTACTCACCTTGTCTGCTGGTCCCATACTTCTGAATGCTTTTATATTGGTTGCTGAGGGTAATGGAAGTTTCAAATATGAGGGTTATGTATTGGTTATATCACTTTTCATTATAAAGATTATAGAGTCATTTGCACAAAGGCAGTGGTATTTTCGCACAAGGCTTGTTGGGATGAAAGTTAGGTCACTACTTACAGCAGCCATTTATAAAAAACTATTGAGGTTATCTAGTGCAGCTAGATTGACACACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAATTCCCATTTTGGTTTCACCAGACATGGACAACAAGCCTCCAACTATGTATTGCATTAGTAATACTTTTTCGTGCTATTGGCCTGGCAACAATTGCCTCTTTGGTAGTGGTAGTTTTCACTGTGCTTTGCAATGCTCCACTAGCAAAGTTGCAGCATAAGTTTCAGAGTGAACTCATGGTGGCACAAGATGAGAGATTGAAGGCCAGTTCTGAGGCTCTTTTAAATATGAAAGTGCTGAAACTCTATGCATGGGAAACTCATTTTAAAAATGCTATAGAAAGACTAAGACGTTTGGAACTGAAATTGTTAGGTGCAGTGCAATTGAGAAAGGCATACAACATCTTTCTATTTTGGACCTCACCTGTTTTGGTCTCTGCTGCTTCTTTTGGGGCATGTTACCTCTTGAAAATTCCTTTGCATGCCAATAATGTTTTCACTTTTGTGGCAACTTTACGCCTTGTACAAGAGTCAGTTACATCCATTCCAGATGTTGTTGGGGTTATCATTCAAGCAAAAGTGGCATTTGCCCGGATTGTTAAATTCCTCAAGGCACCTGAATTGCAAAGTTCAAATTTCAGGAGTAGGTGTTTTGATGACGGTATTAGAGGCTCGATTTCAATCAAATCTGCTGACTTTTCATGGGAAGGCAATGAATCAAAGTCAACACTGAGGAACATAAACTTGGAGATTAGACATGGGCAAAAGTTGGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACCCTCCTAGCAACAATTCTCGGAGAAGTTCCCAAGACAAAGGGAACTATACAAGTGTATGGAACATTTGCATATGTTTCTCAAACAGCATGGATACAAACAGGTACCATACGTGAAAATATTTTGTTTGGATCTGATTTGGATGCTCATAGATATCAAGAAACACTTTGTAGATCTTCACTATTGAAGGACTTGGAGCTGTTTCCCCATGGAGACCTCACTGAAATAGGTGAGAGAGGAGTTAATTTGAGTGGTGGTCAGAAGCAACGAATTCAACTTGCACGTGCTCTTTATCAGAATGCTGATGTATATCTCTTGGATGATCCATTTAGTGCTGTTGATGCACATACTGCCACAAATTTGTTTAATGAATACATCATGGATGGTCTTGAAGCTAAAACTGTTTTACTTGTAACTCATCAAGTTGACTTTCTACCAGCATTTGATTCTGTTTTGTTGATGTCAAATGGGGAAATCCTAGAAACTGCTCCTTATCATCATTTGCTGACCTCAAGTCAAGAATTTCAAGATCTTGTTAATGCTCAAAAGGAAACTGCAGGTTCTGAAAAGCCAATGAATGTTACTTCTTCTAAGAGACATTCAACTTCTTCCAGAGAGATTTCACAAGCTTTCATGCAGAAGTTCAAAGCCGCAAATGAGAATCAATTAATAAAGCAAGAAGAGAGAGAGATAGGAGACACAGGGTTGAAGCCATACTTACAGTATTTGAATCAGATGAAAGGATATATATACTTCTTTGTGGCTTCTCTTTGTCACCTCATGTTTGTCATTTGCCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGATAACTCCAAAGTCAGCACATTGCGGTTGATTTTAGTTTACTTCTTGATTGGGGTTATTTCTACAATCTTCTTGTTGATCAGAACTCTGCTTGTAGTTGCCTTGGGTATTCAATCATCAAAATATTTATTTTTACAATTAATTAACTCCCTTTTTCGTGCACCAATGTCCTTTTATGACTCTACACCATTGGGAAGGATACTTAGTAGGGTGTCATCAGATCTAAGCATTGTGGATCTTGATATACCATTTATCCTCAGTTATATTGTGGCAGGTAGTATATACTTCTATTCTAATCTCACAGTTCTGGCAATTGTCACTTGGCAAGTCTTGGTTGTGTCTATACCAATGATTTATATTGCAATTAGCTTGCAGAGATACTATTTTTCCACTGCAAAAGAAGTGATGCGCGTGAATGGCACAACAAAGTCTTTTGTAGCTAATCATGTAGCCGAAACTATTGCTGGAGCTGTGACAATCAGAGCCTTCGAAGAAGAAGATCGTTTCTTTGAGAAGAATCTCGGTCTAGTTGATATCAATGCTAGTTCTTTCTTCCATAGTTTTGCCTCGAATGAGTGGCTGATCCAAAGATTAGAAATAGTTGGCGCAGTACTTCTTGCCTCTGCAGCACTTTGCATGGTTATGCTTCCACCAGGGACTTTTAAATCTGGATTTATTGGCATGGCTCTCTCTTATGGCTTTACCCTAAACGCTTCCTTAGTATTTTTAATTCAAAGTCAATGCAGTCTAGAAAATTACATAATATCTGTGGAGAGACTGAATCAATATATGCATATACCAAGTGAGGCCCAAGAAGTAATAGAAGAGAATCGTCCTCCTTTGAATTGGCCAGTTGCTGGTAAAATAGAACTAAATGACTTGCAGATACGATACAGGCCTGATGGACCACTTATACTCCATGGAATCACATGCACATTCAAAGCAGGCCACAAGATTGGAATTGTTGCAGGACAGGCAGATCCTACCCTTTTTAATGGGACAGTTAGATACAATTTGGACCCTCTATCTCAACACACTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGTTGTCAAAGAGAAAGGAGATTGCCTAAACTCCTTAGTTGTGGAAGATGGATCGAATTGGAGCATGGGACAAAGGCAATTATTTTGTCTGGGGCGTGCCCTTCTAAGGAGAAGTAGAATATTGGTGCTGGATGAAGCAACTGCATCAATTGACAATGCAACTGATTTGATACTACAGAAAACCATCAGGACTGAGTTTGCAGATTGCACAGTGATCACAGTAGCACACAGGATACCAACCGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAAATTGATGGAGTATGATGAACCAATGAACTTGATGAAGAAAGAAGGATCGCTATTCCTGCAGCTTGTCAATGAATACTGGTCTCATTTTCAATCTGCAGAATCACATTAA 4293 0.389 MEEFWSMLCGDSDCPGNGGKPFCYDFNILKDPSTCTNHFFTICFDVLLMIMLAFILIQKSLFRQFQGTVGRYSNLQLISAITNGSLGLLHLCLSIWNFEKLRESHTIIPLHWWLLELSQGLRCLLVGLSVSLQLKQLTRSWLWLFSLLTLFVSTIFCVLSMSYAISSRELSFKAALDVLSFPGAFLLLLCTYKVYKCDDTNGEFDEGLYDPLNGHFNDVDPVNFVTPFAKAGLLSRMLFWWLNPLMKRGQEKTLQDEDIPKLQESDQAECCYLSFVEQLNKQKGKESLSQSSILWTIILCHRRGILISGIFALLKVLTLSAGPILLNAFILVAEGNGSFKYEGYVLVISLFIIKIIESFAQRQWYFRTRLVGMKVRSLLTAAIYKKLLRLSSAARLTHSGGEIMNYVTVDAYRIGEFPFWFHQTWTTSLQLCIALVILFRAIGLATIASLVVVVFTVLCNAPLAKLQHKFQSELMVAQDERLKASSEALLNMKVLKLYAWETHFKNAIERLRRLELKLLGAVQLRKAYNIFLFWTSPVLVSAASFGACYLLKIPLHANNVFTFVATLRLVQESVTSIPDVVGVIIQAKVAFARIVKFLKAPELQSSNFRSRCFDDGIRGSISIKSADFSWEGNESKSTLRNINLEIRHGQKLAICGEVGSGKSTLLATILGEVPKTKGTIQVYGTFAYVSQTAWIQTGTIRENILFGSDLDAHRYQETLCRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATNLFNEYIMDGLEAKTVLLVTHQVDFLPAFDSVLLMSNGEILETAPYHHLLTSSQEFQDLVNAQKETAGSEKPMNVTSSKRHSTSSREISQAFMQKFKAANENQLIKQEEREIGDTGLKPYLQYLNQMKGYIYFFVASLCHLMFVICQILQNSWMAANVDNSKVSTLRLILVYFLIGVISTIFLLIRTLLVVALGIQSSKYLFLQLINSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFILSYIVAGSIYFYSNLTVLAIVTWQVLVVSIPMIYIAISLQRYYFSTAKEVMRVNGTTKSFVANHVAETIAGAVTIRAFEEEDRFFEKNLGLVDINASSFFHSFASNEWLIQRLEIVGAVLLASAALCMVMLPPGTFKSGFIGMALSYGFTLNASLVFLIQSQCSLENYIISVERLNQYMHIPSEAQEVIEENRPPLNWPVAGKIELNDLQIRYRPDGPLILHGITCTFKAGHKIGIVAGQADPTLFNGTVRYNLDPLSQHTDQEIWEVLGKCQLREVVKEKGDCLNSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLMEYDEPMNLMKKEGSLFLQLVNEYWSHFQSAESH 1430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00770 1430 Gene3D - 1212 1264 IPR027417 -
Cca08g00770 1430 Gene3D - 1265 1419 IPR027417 -
Cca08g00770 1430 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 623 844 IPR003439 GO:0005524
Cca08g00770 1430 ProSitePatterns ABC transporters family signature. 746 760 IPR017871 GO:0005524
Cca08g00770 1430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1218 1417 IPR027417 -
Cca08g00770 1430 Pfam ABC transporter 1225 1349 IPR003439 GO:0005524
Cca08g00770 1430 Gene3D - 601 869 IPR027417 -
Cca08g00770 1430 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 80 1263 - -
Cca08g00770 1430 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 306 586 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g00770 1430 SUPERFAMILY ABC transporter transmembrane region 294 594 IPR036640 GO:0005524|GO:0016021
Cca08g00770 1430 Pfam ABC transporter transmembrane region 305 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g00770 1430 Pfam ABC transporter transmembrane region 913 1155 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g00770 1430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 845 IPR027417 -
Cca08g00770 1430 Gene3D ABC transporter type 1, transmembrane domain 276 600 IPR036640 GO:0005524|GO:0016021
Cca08g00770 1430 Gene3D ABC transporter type 1, transmembrane domain 876 1211 IPR036640 GO:0005524|GO:0016021
Cca08g00770 1430 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1154 1418 IPR003439 GO:0005524
Cca08g00770 1430 MobiDBLite consensus disorder prediction 847 866 - -
Cca08g00770 1430 CDD ABC_6TM_ABCC_D1 307 594 IPR044746 GO:0140359
Cca08g00770 1430 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 916 1192 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g00770 1430 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 1267 1430 - -
Cca08g00770 1430 SMART AAA_5 648 821 IPR003593 -
Cca08g00770 1430 Pfam ABC transporter 639 773 IPR003439 GO:0005524
Cca08g00770 1430 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1267 1430 - -
Cca08g00770 1430 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 80 1263 - -
Cca08g00770 1430 SUPERFAMILY ABC transporter transmembrane region 911 1209 IPR036640 GO:0005524|GO:0016021
Cca08g00770 1430 CDD ABCC_MRP_domain1 621 821 - -
Cca08g00770 1430 CDD ABC_6TM_ABCC_D2 915 1204 IPR044726 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00770 Cca-Chr8 15100864 15111159 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00770 615 877 Calmodulin-binding Proteins AT2G36910 27.599 3.37e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00770 K05666 - gmx:100787314 2393.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00770 08 15100864 15111159 Cca08g00770 08 15100864 15111159 ECH
Cca08g00770 08 15100864 15111159 Cca02g02187 02 42387159 42394233 PCT