Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00768 ATGGAAGATTTTTGGAGCATGATTTGTGGGAATTCTGTTTGTTCAAAGACTGTAGGAAAGCCTTTCTATTATGATTTCAAGTTTTTGACAGATCCTTCTGCATGCATCAACCATTTATTGATCATTTGCTTTGATGTGTTACTGTTGATCATGCTGTCATTCGCTATGATCCAGAAGTCTTTGTCAAGGCCATGTCATGGTCTAATCCGAGTTGAAAGATATTCAAATTTGCAGCTATTTTCTTCCATAGCCAGTGGTTCTCTTGGATTGATGCATTTGTGCTTAGGCATTTGGGTTTTAGAGGAGAAGTTAAGGAAAAACCATACTACTTTTCCCATTAATTGGTGGTTGCTAGAACTCTTTCAGGGATTCACATGGTTGTTAGTAGGTTTAACTGTTAGTCTTCAGCTGAAACAACTCTCAAGGGTATGGTTATGGCTGTTCTCTATACTTACATTCTTCGTTTATGGTATTTTCTGTCTTCTTTCCATGTCTTATTCAATTAGCAACAGAGAACTATCCTTGAAGGTAGCTTTAGATGTTCTATGTTTTCCTGGAGCATTTTTACTACTCTTATGCACTTACAGAGTATCTAAATATGAAGACACTAACAGAGAAACTAATGAAGGCCTTTATGCCCCTTTAAGTGACCAGTTCAATGACGATGATCCTAATAGGTGTGTGACTCCATTTGCCAATGCTGGATTCTTTAGTATGATGTCCTTTTGGTGGTTGAATCCACTTATGAAAAAGGGTCAAGAGAAAACACTCGAGGATGAGGATATCCCGAAGTTGCGGGAGTTAGATCGAGCACAAAGTTGTTATTTGTCGTTTGAAGAACAATTGAACAAACAGATAGAAAAAGACCCATCATCACATGTATCGATTTTGTGGATAATAATTTTGTGCCATCGAAAAGAGATTCTGATATCAGGACTCTTTGCATTGCTTAAGGTACTGACTCTGTCTTCTGGTCCTCTACTTCTAAACGCCTTTATATTGATTGCTGAGGGTAATGAAAGTTTCAAAGATGAGGGTTATGTATTGGTCTTATCACTTTTCATTATAAAGATCATAGAGTCTTTATCACAAAGGCAGTGGTATTTCCGCAGTAGACTTGTTGGGATGAAAGTTAGGTCACTGCTTACTGCAGCCATTTATAAAAAGTTGTTGAGGTTGTCCAATGTTGCTAGATTGACACACTCTAGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAATTCCCATTTTGGTTCCACCAAACATGGACAACAAGTGTCCAAATATGTATTGCTTTAGTGGTACTTTTTCGTGCCATTGGGATCGCAACAATCGCCTCGTTGGTGGTGATTGTTCTCACTGTGCTATGCAATACTCCAATAGCAAAGTTGCAACACAAGTTTCAGAGCGAACTTATGGGGGCACAAGATGAGAGATTGAAGGCTAGTTCTGAGGCTCTTGTGAATATGAAAGTTCTTAAGCTATATGCTTGGGAAAACCATTTTAAAAAAGCTATAGAAAAGTTAAGAAAAGTGGAACTCAAATTGTTGGCTGCAGTGCAACTAAGAAAGGCATACAACATATTTATCTTTTGGTCTTCGCCTGTTTTGGTCTCTGCTGCTTCCTTTGGGGTATGTTACTTCCTGAAAATTCCTTTGCATGCAAATAATGTTTTCACTTTTGTGGCAACTTTACGGATTGTGCAAGAGCCCATTACAACCATCCCAGATGTAATCGGGGTGGTCATTCAAGCAAAGGTTGCATTCACTCGGATTATTAAGTTCCTTGAGGCACCAGAACTACAAAGCGGATATTTTAGGAACAAGTGTTTTGTTAACAATCTCAAAGACCCTATTTTAATCAAACATGCCGATTTTTCGTGGGAAGATAGTGTGTCAAAGCCTACACTGAGGAACATGAATTTGGAGGTTAAACATGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTATCAACAATTCTTGGAGAAGTTCCTCTTATAAAAGGAACGATTGAAGTTTATGGGAAGTTTGCTTATGTTTCTCAAACAGCATGGATACAAACAGGTACCATAAGGGAAAATATTTTGTTTGGATCTGATTTGGATGCTGAAAGATATCAAGAAACACTCCATAGATCTTCACTAGTGAAGGACCTGAAGTTGTTTCCCTATGGTGACCTAACCGAAATAGGTGAGAGAGGAGTTAACCTAAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCTCTTTATCAGAATGCTGATGTATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACACACTGCCACAAATTTGTTTAATGAATACATCATGGAAGGACTTAGAGAGAAAACTGTCTTACTCGTAACTCATCAAGTTGACTTCCTCCCAGCATTTGATTTTGTTTTGCTAATGTCAGATGGGGAAATCCTTGAAGCTGCTCCTTATCATCATCTATTGAGTTGGAGCAAAGAATTCCAGAACCTCGTCAATGCTCACAAGGAAACTGCTGGTTCTGACAACCTTAAGAATGTTACATCTTCCAAGAGACATCCAACTTCTGCTGAAGATATTACACAAGCTTTCATGAAGAATCAGTTCCATGAAGCACATAGAAATCAATTAATAAAGCAAGAAGAAAGAGAGACAGGAGACACAGGATTCAAGCCTTACTTACAATATCTGAATCAATTGAAATGCTATGTGTACTTTTCTGTGGCTGCTCTTTGCCACCTTATATTTGTGATTGGCCAGATATTGCAAAACTCGTGGTTGGCTACTAATGTTGACAATCCCCACGTCAGCATGATGCGATTGATTGTTGTTTACTTCTTGATTGGAGTTATTTCAATACTTTTCATGTTGATCAGAAGTCTACTTCTTGTTTCTTTGGGTTTACAATCATCAAAGTATCTTTTTTTACAGTTAATGAACTCACTTTTTCGTGCACCAATGTCATTTTATGACTCTACACCATTGGGAAGGATACTTAGTAGGGTCTCATCAGATCTAAGCATTGTGGATCTTGATATCCCTTTTAGCCTCACCTTTGTTGTGGGAGCTACCATAAATACTTATTCAACTCTTACAGTTTTAGCAATTGTCACTTGGCCAGTGTTGATTATCTCTACACCACTTGTTTATATTGCAATTCGCTTGCAGAGGTACTACTTTGCCTCAGCTAAAGAAGTAATGCGGATGAACGGCACAACAAAATCCTTCATAGCTAATCATATTGCTGAAAGTGTTGCTGGAGTAGTGACAATAAGGGCTTTTGAGGAGGAAGATCGTTTCTTTGCAAAGAATCTTGATTTAATTGATATCAATGCTAGTCCTTTCTTCCATAGTTTTTCCTCAAATGAGTGGTTGATCCAACGTTTAGAAATTGTAGCAGCAGTTGTTCTTGCCTCCGCGGCGCTTTGCATGGTCTTGTTTCCACCTGGGACTTTCTCCTCTGGGTTTATTGGCATGGCTCTCTCTTATGGCCTTACACTAAACTTTTCGTTAGTACTTTCAATTCAAAGTCAATGCACTCTTGCAAATTATATAATATCTGTGGAGAGGCTAAATCAATATATGCACATACAAAGTGAGGCCGCAGAAGTAATAGAAGCAAAACGTCCTCCTTTGAATTGGCCAAATGAAGGTGAAGTAGAAATAAATGGCTTAAAGGTACGATACAAGCTTGATGGACCACTTATACTCCATGGAATCACATGCACATTCAAAGCAGGCCACAAAACTGGAATTGTTGGCAGGACAGGCAGTGGGAAATCCACACTTATAGGTGCTTTATTTCGTCTTGTGGAGCCAGCTGGTGGAAAAATTGTAGTTCATGGCATAGACATCTCTTCTATTGGCCTTCATTATTTGAGGTCACGTTTTGGTGTTATACCTCAGGATCCTACCCTTTTTAATGGGTCAGTTAGATACAATCTGGACCCTCTATCTCAACACTCTGATCAAGAGATATGGGAGGTTCTCGGGAAGTGTCAGTTGCGAGAAGTTGTCCAAGAAAAAGAAGAGGGCCTAAACTCCTCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAACTATTTTGTTTGGGGCGTGCTATTTTGAGAAGTAGTAAGATATTGGTGCTGGATGAAGCAACAGCATCAATTGATAGCGCAACTGATTTGATTCTGCAGAAAACCATTAGGACTGAATTTGTTGATTGTACTGTGATCACAGTAGCACACAGAATACCAACTGTGATGGATTGCACTATGGTTCTTGCAATCAGTGATGGAAAAGTAGTCGAGTACGATGAGCCAAATGCCTTGATGAAAAGAGAAGGATCGTTGTTCAGACAACTTGTCCAAGAATATTGGTCTCATTTTCAGTCTACAGAATCACTTTGA 4440 0.3914 MEDFWSMICGNSVCSKTVGKPFYYDFKFLTDPSACINHLLIICFDVLLLIMLSFAMIQKSLSRPCHGLIRVERYSNLQLFSSIASGSLGLMHLCLGIWVLEEKLRKNHTTFPINWWLLELFQGFTWLLVGLTVSLQLKQLSRVWLWLFSILTFFVYGIFCLLSMSYSISNRELSLKVALDVLCFPGAFLLLLCTYRVSKYEDTNRETNEGLYAPLSDQFNDDDPNRCVTPFANAGFFSMMSFWWLNPLMKKGQEKTLEDEDIPKLRELDRAQSCYLSFEEQLNKQIEKDPSSHVSILWIIILCHRKEILISGLFALLKVLTLSSGPLLLNAFILIAEGNESFKDEGYVLVLSLFIIKIIESLSQRQWYFRSRLVGMKVRSLLTAAIYKKLLRLSNVARLTHSSGEIMNYVTVDAYRIGEFPFWFHQTWTTSVQICIALVVLFRAIGIATIASLVVIVLTVLCNTPIAKLQHKFQSELMGAQDERLKASSEALVNMKVLKLYAWENHFKKAIEKLRKVELKLLAAVQLRKAYNIFIFWSSPVLVSAASFGVCYFLKIPLHANNVFTFVATLRIVQEPITTIPDVIGVVIQAKVAFTRIIKFLEAPELQSGYFRNKCFVNNLKDPILIKHADFSWEDSVSKPTLRNMNLEVKHGQKVAICGEVGSGKSTLLSTILGEVPLIKGTIEVYGKFAYVSQTAWIQTGTIRENILFGSDLDAERYQETLHRSSLVKDLKLFPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATNLFNEYIMEGLREKTVLLVTHQVDFLPAFDFVLLMSDGEILEAAPYHHLLSWSKEFQNLVNAHKETAGSDNLKNVTSSKRHPTSAEDITQAFMKNQFHEAHRNQLIKQEERETGDTGFKPYLQYLNQLKCYVYFSVAALCHLIFVIGQILQNSWLATNVDNPHVSMMRLIVVYFLIGVISILFMLIRSLLLVSLGLQSSKYLFLQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLTFVVGATINTYSTLTVLAIVTWPVLIISTPLVYIAIRLQRYYFASAKEVMRMNGTTKSFIANHIAESVAGVVTIRAFEEEDRFFAKNLDLIDINASPFFHSFSSNEWLIQRLEIVAAVVLASAALCMVLFPPGTFSSGFIGMALSYGLTLNFSLVLSIQSQCTLANYIISVERLNQYMHIQSEAAEVIEAKRPPLNWPNEGEVEINGLKVRYKLDGPLILHGITCTFKAGHKTGIVGRTGSGKSTLIGALFRLVEPAGGKIVVHGIDISSIGLHYLRSRFGVIPQDPTLFNGSVRYNLDPLSQHSDQEIWEVLGKCQLREVVQEKEEGLNSSVVEDGSNWSMGQRQLFCLGRAILRSSKILVLDEATASIDSATDLILQKTIRTEFVDCTVITVAHRIPTVMDCTMVLAISDGKVVEYDEPNALMKREGSLFRQLVQEYWSHFQSTESL 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00768 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 927 1196 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g00768 1479 SUPERFAMILY ABC transporter transmembrane region 906 1213 IPR036640 GO:0005524|GO:0016021
Cca08g00768 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g00768 1479 Gene3D ABC transporter type 1, transmembrane domain 880 1214 IPR036640 GO:0005524|GO:0016021
Cca08g00768 1479 Gene3D ABC transporter type 1, transmembrane domain 277 606 IPR036640 GO:0005524|GO:0016021
Cca08g00768 1479 Gene3D - 612 870 IPR027417 -
Cca08g00768 1479 SUPERFAMILY ABC transporter transmembrane region 297 602 IPR036640 GO:0005524|GO:0016021
Cca08g00768 1479 Pfam ABC transporter transmembrane region 309 575 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g00768 1479 Pfam ABC transporter transmembrane region 918 1181 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca08g00768 1479 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524
Cca08g00768 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1233 1467 IPR003439 GO:0005524
Cca08g00768 1479 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 70 1478 - -
Cca08g00768 1479 CDD ABCC_MRP_domain1 624 824 - -
Cca08g00768 1479 Pfam ABC transporter 642 776 IPR003439 GO:0005524
Cca08g00768 1479 Pfam ABC transporter 1250 1398 IPR003439 GO:0005524
Cca08g00768 1479 Gene3D - 1216 1469 IPR027417 -
Cca08g00768 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 847 IPR003439 GO:0005524
Cca08g00768 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1466 IPR027417 -
Cca08g00768 1479 CDD ABCC_MRP_domain2 1231 1451 - -
Cca08g00768 1479 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 70 1478 - -
Cca08g00768 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 847 IPR027417 -
Cca08g00768 1479 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Cca08g00768 1479 CDD ABC_6TM_ABCC_D2 919 1208 IPR044726 GO:0140359
Cca08g00768 1479 SMART AAA_5 651 824 IPR003593 -
Cca08g00768 1479 SMART AAA_5 1259 1452 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00768 Cca-Chr8 15005923 15013913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00768 618 835 Calmodulin-binding Proteins AT2G36910 30.769 1.51e-24 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00768 K05666 - gmx:100787314 2348.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02187 02 42387159 42394233 Cca08g00768 08 15005923 15013913 ECH
Cca08g00768 08 15005923 15013913 Cca08g00768 08 15005923 15013913 ECH
Cca08g00768 08 15005923 15013913 Cca02g02188 02 42395822 42403500 PCT