Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00752 ATGGAACAGAAGCGCGTTCTGTTGTCAGCATTGAGTgttggggttgggttgggtgtggggctcgggttgagttCAGGGCAGAAATGGGTTGGCGGGAATCGTGCCTCTGATGAGCTTTCTTTGGAGCAGATTGAGCAGGAGCTCAAGAAGCTGGTGGTTGATGGAAGGGACAGCAAGGTTACGTTTGAAGACTTTCCTTATTACTTGAGTGAAAGAACTCGAGTTTTGTTGACAAGTGCCGCATATGTTCATTTAAAACATCTGAATTTTTCCAAGCACACCAGGAACCTCTCACCAGCAAGCAGGGCTATTTTGCTATCTGGTCCAGCTGAACTTTACCAGCAAATGCTTGCCAGAGCTTTAGCACATTGCTTTGAATCAAAATTGTTGTTGTTAGATATTACTGACTTCTCTTTGAAGTTGCAAAACAAATTTGGATGTTCTAGAAAAGTACCATCTTTGAAAAGGTCAATATCCGAGGCAACTTTGGAGCGAATGTCTGGTTTGTTTGGTTCCTTTTCAATGCTTTCTTCAACAGGAGAAACAAGAGGAATTCTGCGTCAACAAAGCAGTGCTGCTGAAAGTTCCAATCCTCCAAAGCTTAAGAGGAATGCTTCTGCTGCATCAGATCTAAGTAGCACTGCTTCCCAGTGTGGCCCAACATTTCCAGCTCCTTTAAAGCGCACAAGTAGCCTGTGTTTTGATGAAAAGCTCTTTGTGCAATCTCTTTACAAGCTTTTGGTTTCTATCACCGAAACTAGTTCCATCATATTATACATCAGGGATGTTGAGAAGCTAGTTCTCCAATCACCAAGGTTATATAATTTATTACAAAAAATGATAAAGAAACTGTCAGGCGCAGTGTTGATACTTGGTTCCCAGTTATTAGATTCAGAAGATGATTGCAAAGAAGATGATGAAAGGATCACTGCATTGTTCCCCTACAGCATTGAGATCAAAGCTCCTGAAGATGAAACTAATCTTGGCAGTTGGAAAGGCCAACTTGAAGAGGACATGAAAATTATTCAGTTCCAAGATAACAGAAACCACATTGCTGAAGTACTAGCAGCAAATGACATTGAATGTGATGACTTGAATTCAATCTGCCATGCAGACACTATCTTACTTGGCAATATTGAAGAAATCGTAGTATCTGCAATATCTTATCATTTGATGAATACAAAAGATCCAGAATACCGAAATGGAAAGCTAGTTATATCGGCCAACAGTTTGTCCCATGGATTGAGTCTGTTCCAGGAAGGCAAGAGTAGTGGGAATCTTAAGACTAACGAATCTAACAAGGAAAATGCTGGAGAAGATATTATTGGTGCAAAAAATGAAATGAAGTGTGACAACCAAGCACCTGAAAACAAGAGTGAAACAGAGAAATCCATCCCAGTAACAAAGAAAGATGGCGAAAATCCTACACCTGCAAAAGCAGAAGTTCCTGACAATGAGTTTGAGAAGCGCATAAGACCAGAGGTTATCCCTGCAAATGAGATAGGGGTTACATTTGCAGATATTGGTTCGTTGGATGAGATCAAAGAATCACTTCAAGAGCTTGTGATGCTTCCTCTGAGAAGGCCAGACCTCTTCAAAGGTGGGCTTCTAAAGCCATGTAGAGGTATATTGCTGTTTGGGCCTCCTGGTACTGGAAAAACAATGCTAGCAAAGGCAATTGCAAATGAAGCTGGTGCAAGTTTCATCAATGTCTCAATGTCAACCATCACATCAAAATGGTTTGGGGAAGATGAAAAGAACGTGCGTGCTCTGTTCACACTGGCAGCTAAGGTTGCCCCAACAATTATATTTGTTGATGAGGTTGACAGCATGCTTGGACAGCGGACTAGAGTAGGAGAGCATGAGGCCATGAGGAAGATTAAAAATGAGTTCATGACACATTGGGATGGACTATTGACAGGGCCTAATGAGCAAATTTTGGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCTATCATAAGGCGCTTTCAGCGCAGGATCCTGGTTGGTCTTCCATCTGTTGAGAACAGGGAAAAGATCTTGAAGACACTTCTGGCTAAAGAGAAATATGAAAATTTAGACTTTAAAGAGCTGGCAACCATGACAGAAGGATATACCGGAAGTGATCTTAAGAATTTGTGCATCACTGCGGCTTATCGACCTGTTAGGGAGCTAATACAGCAGGAGAGAACGAAGGAAATGGAAAAAAAGAAAAGAGAGGCAGAAGGCCAAAGCTCAGAAGATGCTTCAAACAATAAAGATAAGGAAGACCAAGAAATTACCTTGAGGCCTTTAAACATGGAAGATATGAGACAGGCTAAGAGTCAGGTGGCTGCAAGTTTTGCATCAGAAGGATCTGTAATGAATGAGTTGAAGCAGTGGAATGATCTGTATGGAGAAGGTGGTTCAAGGAAGAAACAACAACTCACTTACTTCCTTTAG 2451 0.4076 MEQKRVLLSALSVGVGLGVGLGLSSGQKWVGGNRASDELSLEQIEQELKKLVVDGRDSKVTFEDFPYYLSERTRVLLTSAAYVHLKHLNFSKHTRNLSPASRAILLSGPAELYQQMLARALAHCFESKLLLLDITDFSLKLQNKFGCSRKVPSLKRSISEATLERMSGLFGSFSMLSSTGETRGILRQQSSAAESSNPPKLKRNASAASDLSSTASQCGPTFPAPLKRTSSLCFDEKLFVQSLYKLLVSITETSSIILYIRDVEKLVLQSPRLYNLLQKMIKKLSGAVLILGSQLLDSEDDCKEDDERITALFPYSIEIKAPEDETNLGSWKGQLEEDMKIIQFQDNRNHIAEVLAANDIECDDLNSICHADTILLGNIEEIVVSAISYHLMNTKDPEYRNGKLVISANSLSHGLSLFQEGKSSGNLKTNESNKENAGEDIIGAKNEMKCDNQAPENKSETEKSIPVTKKDGENPTPAKAEVPDNEFEKRIRPEVIPANEIGVTFADIGSLDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTGPNEQILVLAATNRPFDLDEAIIRRFQRRILVGLPSVENREKILKTLLAKEKYENLDFKELATMTEGYTGSDLKNLCITAAYRPVRELIQQERTKEMEKKKREAEGQSSEDASNNKDKEDQEITLRPLNMEDMRQAKSQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00752 816 MobiDBLite consensus disorder prediction 433 483 - -
Cca08g00752 816 SMART AAA_5 539 676 IPR003593 -
Cca08g00752 816 MobiDBLite consensus disorder prediction 734 761 - -
Cca08g00752 816 Pfam ATPase family associated with various cellular activities (AAA) 543 673 IPR003959 GO:0005524|GO:0016887
Cca08g00752 816 MobiDBLite consensus disorder prediction 421 483 - -
Cca08g00752 816 CDD AAA 541 674 - -
Cca08g00752 816 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 816 - -
Cca08g00752 816 Gene3D - 675 745 - -
Cca08g00752 816 ProSitePatterns AAA-protein family signature. 646 665 IPR003960 GO:0005524|GO:0016887
Cca08g00752 816 Gene3D - 502 674 IPR027417 -
Cca08g00752 816 Pfam AAA+ lid domain 695 738 IPR041569 -
Cca08g00752 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 732 IPR027417 -
Cca08g00752 816 MobiDBLite consensus disorder prediction 187 217 - -
Cca08g00752 816 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00752 Cca-Chr8 14585773 14593452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00752 503 732 Calmodulin-binding Proteins AT3G56690 39.744 1.13e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00752 - - gmx:100817952 1444.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00752 08 14585773 14593452 Cca08g00752 08 14585773 14593452 ECH