Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00739 ATGGCTCATGAGGATTGGGATCTCTTTGCCATCGTGAGAAGTTGCAAAGCTTCACCCTTTAGTGTCACCGCAGACACAAACACAGAAACCCCACCCACCATCTCCATCACTCCTAACACAACCACCTCTTCTCGCTTTGATGCTTTCATGGTTAACCATGAAAGTGGCTCATTCTCTTTTCCCAATCTTGTGCAACAAAGAACCAATGAGTTCCAAGAGCTTCACCAATTGTTGATGAACTTCAaccccaccaccaccacaaacaccattagtagcactagcactatcactagTGCCCTTGGCATCAATCCCAATTCCACTTTTTCTGACGTTGCGGGATTCATTGGACAACAGCAGACACAGCAAAGTCACCACCACCATCATCTAGTTCCTGCTCCCACAAATTACACTTCCATTGGAGCACCCTCCACTACTGGTTTTGACATATTCCACCACCACCAACAGCAGCCACAAACGCAAACCCAAATTCCAGAGCAACAAAAAACCTTTCAAGCACCACAAACAAGTCCCATCCTTTCACCAAACACACAGTCACAACCCCAGGCACCCAGACCAAGAAAAAGAAAAAACCAACAGAAGAAAATGGTATGTCATGTAACCGCAGACAACCTCTCAGCAGACTTATGGGCATGGCGAAAATATGGTCAGAAACCCATAAAAGGCTCTCCATATCCAAGGAACTACTACAGATGCAGTAGCTGCAAAGGATGCGCCGCGAGAAAGCAAGTGGAGAGAAGCACCACAGAACCGAACACGTTCATCGTTACCTACACCGGCGATCACAAGCATGCAAAACCTGTTCACCGGAACTCCCTCGCCGGAAGCACTCGCTCCAAGCCATCCTCCACCCGTTTACCCGAAACCAACGAAACCGGGTCTTGCTCCAAAGAAGAAAACGCTGCGTGTTCTTCTACTTCTGCGCTTTCTCCGACGTCGTTTAGGTCCGGTACGCCAGAAAATGAGGCAGGAGTCGCTGCCGGCGAACATGAACCGGAATTGGGAACAGTCCCCGATGCACAGTCTGAAAACGAAGACGACGACGTTTTGATACCCAACGTGGGTGCCATGTCGGACGCTATTCTCTTGGGGTTGACCACTAAGTGA 1125 0.4684 MAHEDWDLFAIVRSCKASPFSVTADTNTETPPTISITPNTTTSSRFDAFMVNHESGSFSFPNLVQQRTNEFQELHQLLMNFNPTTTTNTISSTSTITSALGINPNSTFSDVAGFIGQQQTQQSHHHHHLVPAPTNYTSIGAPSTTGFDIFHHHQQQPQTQTQIPEQQKTFQAPQTSPILSPNTQSQPQAPRPRKRKNQQKKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSCKGCAARKQVERSTTEPNTFIVTYTGDHKHAKPVHRNSLAGSTRSKPSSTRLPETNETGSCSKEENAACSSTSALSPTSFRSGTPENEAGVAAGEHEPELGTVPDAQSENEDDDVLIPNVGAMSDAILLGLTTK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00739 374 Gene3D WRKY domain 195 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca08g00739 374 Pfam WRKY DNA -binding domain 214 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g00739 374 MobiDBLite consensus disorder prediction 265 357 - -
Cca08g00739 374 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 372 IPR044810 GO:0003700
Cca08g00739 374 MobiDBLite consensus disorder prediction 153 192 - -
Cca08g00739 374 MobiDBLite consensus disorder prediction 153 202 - -
Cca08g00739 374 ProSiteProfiles WRKY domain profile. 207 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g00739 374 SMART WRKY_cls 212 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca08g00739 374 MobiDBLite consensus disorder prediction 278 325 - -
Cca08g00739 374 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 4 372 - -
Cca08g00739 374 SUPERFAMILY WRKY DNA-binding domain 207 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00739 Cca-Chr8 13995048 13996432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00739 191 286 WRKY Transcription Factor Family AT5G52830 80.208 1.07e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca08g00739 WRKY 6.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00739 - K13425 gmx:100796829 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02209 02 42597522 42598771 Cca08g00739 08 13995048 13996432 ECH
Cca01g02328 01 51837452 51838739 Cca08g00739 08 13995048 13996432 ECH
Cca07g01953 07 46987144 46991966 Cca08g00739 08 13995048 13996432 ECH
Cca08g00739 08 13995048 13996432 Cca08g00739 08 13995048 13996432 ECH
Cca08g00739 08 13995048 13996432 Cca02g02209 02 42597522 42598771 PCT