Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00722 ATGGTTTCCAAAAACCCGAACCCGCCCGAGGGATTCTACTTGGATCCGACCGGCATGGCTCTCTCGGGGATGCCTCCCTTCGCCTCCGTCTCCGCCGCCGCCAACTCGCCGGAGGACGCCGCCAAGAAGATACGGAAGCCCTACACTATCACCAAGTCAAGGGAGAACTGGACTGAACCCGAACACGACAAGTTTCTTGAAGCTCTTCAACTGTTTGATCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACTGTTATACAGATACGCAGCCATGCGCAGAAATACTTTCTAAAAGTTCAGAAGAGCGGAACAAGTGAACATCTTCCTCCACCCAGGCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCAAAAAATGCTCCTGTACTCTCGCAAGTGTCGGGATCTCTTCAATCTTCACCGGCTTTGCTTGAACCTGGATGTATCCTAAAGAATGATTCCTCACCAATGCTTAAAAGTCCTATTATGAACACTGTGGTGTCGTCCTGGTCAAACAACACCTTGCAAGCAATCAATTTATCCCCTGTGGCAAAAGTGAATATTTGCAGTAGTGGTGAAAGCACTCCTAAAGTTCGGCCAGTTGGTGAATCTAATGGTCAAGGGAATAAAATCCATCCATTGAGAGTTCTTCCGGATTTTACTCAGGTATATGGCTTCATTGGCAGTGTATTTGACCCAAATGCAACTGAGCATCTCCAGAAACTAAAAGAGATGGACCGTATTGATGTTGAGACGGTGCTATTGTTAATGAGAAACCTGTCTATCAATTTAACTAGCCCAGATTTTGAGGATCATAGAAAGGTTCTTTCATCATATGAAGTTGAAGCCAGAGAGAAATAA 876 0.4509 MVSKNPNPPEGFYLDPTGMALSGMPPFASVSAAANSPEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHLPPPRPKRKAAHPYPQKASKNAPVLSQVSGSLQSSPALLEPGCILKNDSSPMLKSPIMNTVVSSWSNNTLQAINLSPVAKVNICSSGESTPKVRPVGESNGQGNKIHPLRVLPDFTQVYGFIGSVFDPNATEHLQKLKEMDRIDVETVLLLMRNLSINLTSPDFEDHRKVLSSYEVEAREK 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00722 291 Gene3D - 56 104 - -
Cca08g00722 291 ProSiteProfiles SANT domain profile. 52 103 IPR017884 -
Cca08g00722 291 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 52 101 IPR006447 GO:0003677
Cca08g00722 291 Pfam Myb-like DNA-binding domain 54 99 IPR001005 -
Cca08g00722 291 PANTHER PROTEIN REVEILLE 6 3 289 - -
Cca08g00722 291 SMART sant 53 101 IPR001005 -
Cca08g00722 291 MobiDBLite consensus disorder prediction 104 136 - -
Cca08g00722 291 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Cca08g00722 291 CDD SANT 56 99 IPR001005 -
Cca08g00722 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 103 IPR017930 -
Cca08g00722 291 PANTHER SWI/SNF COMPLEX-RELATED 3 289 - -
Cca08g00722 291 ProSiteProfiles Myb-like domain profile. 49 99 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00722 Cca-Chr8 13616599 13623513 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca08g00722 Myb_DNA-binding 3.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00722 - - gmx:100783949 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02214 02 42655799 42664591 Cca08g00722 08 13616599 13623513 ECH
Cca08g00722 08 13616599 13623513 Cca08g00722 08 13616599 13623513 ECH