Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00718 ATGAAAAACAAGGTCTCAATATCGACCATATTCTTTGGCATCCCATTGTGGGCTTGGCTAATAGTAGCTTCATTGATAGTAACATTCATTGTTGTGACATGTGTCATTGTGTGCTATTGTTTCATACACTATCGTAAAAAGCCATACAAACCCCGTTTTTCTTTACCCAAATCAATTGCATGCAAGCACCATGTTTGTGATTTTAGCTCTTCCTCCCTTGACAAAAGGTTGCTATCAGCATCAAGCAATGTCTCAGAACATGGGATTAACTTTGAGAAGTTGCCATCATCATGTCATAGTCATGAGTTGGTCCTACCTAACCAGTTTGATCCACATGTTAATGGCATTATTACAAAAGATGGGTATTTGAAAGGTTTGAGATCAAGTGATAAGCTTTGTCCCTTTGACAATGATATGAGTAAAGGGTGTTGCTTTAGCCTTAAGGAGATAGAGTATGCTACTAATGGATTGGCTCAAGAAAATGTGATTGGAAGTGGGGACAATGGGATTGTTTATCTTGGTTTTTTGCCAAATGATAGACACGTGGCAGTCAAGAGGCTAGTGTGTGACAGTCGCCAACCTGAGAAATTATTTGCATTCCAAATGGAGGAAATTGGACGTGTAAAGCATGATAAGCTGGTCAAATTGCTTGGATATTGTGCCGAGGGTGCTCACAGGATCTCAGTATCTGAATACGTAGAAAATGAAAGTCTGCATCACTGGCTTCATGAATTTCCCGAACAAATAAGCCCTCTAACATGGGATACAAGATTGAACATTATCTGTGGTGTTGCAAAAGGACTGGCATACCTTCATGAGAAAGTCAAACCAAAGATTCTCCATGGCAACCTAACATCTAGCAATATTTTGCTTGACCAACGATGGAATCCAAAAATATCTGATTTTGGTCTTGTTAATATTCTCAGTCCTGAATGCAGTCACATTATACTGGAATCATTAGGTTATGTGGCACCAGATAGCAATTTCACTAGCACCTTCACTAAGGGTAATGACATCTATGATTTTGGAATACTTATCATGGAGATTGTATCAGGAAGGCTTCCTTCAAATCAGAGTCAGCCACAGACTCATATAGTGGACTGGTTCAAATCAATGATTTCCAATGGAAAAATTGATTCCGTGGTGGATCCAAAATTGCTTGAAATGCCTTCTTCCAAGATACTTAAACGTGTTGCTTTGGTAGCTCTAAGATGTGTAGATCGTGATGTGAATCCTAAACTCAAAATGGGAGATGTGGTTTGCATGCTTCAGACCAACCTACTGCTTTTTGAGGAACGTCGAATTGCCATGGAGACTTGTGAACAGAATCACTCACCACAAAATCAGCAAAATTAG 1356 0.3938 MKNKVSISTIFFGIPLWAWLIVASLIVTFIVVTCVIVCYCFIHYRKKPYKPRFSLPKSIACKHHVCDFSSSSLDKRLLSASSNVSEHGINFEKLPSSCHSHELVLPNQFDPHVNGIITKDGYLKGLRSSDKLCPFDNDMSKGCCFSLKEIEYATNGLAQENVIGSGDNGIVYLGFLPNDRHVAVKRLVCDSRQPEKLFAFQMEEIGRVKHDKLVKLLGYCAEGAHRISVSEYVENESLHHWLHEFPEQISPLTWDTRLNIICGVAKGLAYLHEKVKPKILHGNLTSSNILLDQRWNPKISDFGLVNILSPECSHIILESLGYVAPDSNFTSTFTKGNDIYDFGILIMEIVSGRLPSNQSQPQTHIVDWFKSMISNGKIDSVVDPKLLEMPSSKILKRVALVALRCVDRDVNPKLKMGDVVCMLQTNLLLFEERRIAMETCEQNHSPQNQQN 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00718 451 Gene3D Phosphorylase Kinase; domain 1 126 232 - -
Cca08g00718 451 ProSiteProfiles Protein kinase domain profile. 157 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00718 451 PANTHER OS01G0323000 PROTEIN 2 445 - -
Cca08g00718 451 ProSitePatterns Protein kinases ATP-binding region signature. 163 185 IPR017441 GO:0005524
Cca08g00718 451 SUPERFAMILY Protein kinase-like (PK-like) 140 423 IPR011009 -
Cca08g00718 451 Pfam Protein tyrosine and serine/threonine kinase 159 363 IPR001245 GO:0004672|GO:0006468
Cca08g00718 451 Gene3D Transferase(Phosphotransferase) domain 1 233 441 - -
Cca08g00718 451 PANTHER BNAC04G54280D PROTEIN 2 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00718 Cca-Chr8 13559518 13563646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00718 145 436 Receptor kinase-like Gene Family AT3G58690 35.099 1.26e-56 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Cca08g00718 PK_Tyr_Ser-Thr 8.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00718 - - vra:106762086 619.002