Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00716 ATGGCGGTAGGACTCTCCGCCGCCATAACCTTGAAGCCCCTTCACCGTTTCCACCAACCCCACTTCCCCAAACCAACCCCAACACTACCCTTTTCTCCCCTCAGAACTTCCCCAAGAACACACAGATTGTCGAACTTCACCGTTTGTGTCCTCATGCAGGATCCCAAACAAGGGTCCCACATCGAAATTGAGCCCCCAGAGCAACCTCTTTCTCCTCAACAAGTACCCGTGTCAGCTAAGTTGGCTGAGAAATTGGCCAGAAAGGAATCGGAGAGGTTCACTTACCTCGTTGCTGCTGTCATGTCCACCTTTGGCATCACATCCATGGCAGTGCTCGCTGTTTATTATAGATTCTCGTGGCAAATGGAGGGTGGAGACGTGCCTTGGGCCGAAATGTTTGGCACATTTGCTCTATCAGTGGGAGCTGCTGTGGGTATGGAGTTTTGGGCTAGATGGGCTCATGAGGCTCTCTGGCATGCTTCCTTGTGGCACATGCATGAGTCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTCGCAATAATCAATGCTGTTCCTGCCATCGCTCTCCTTGCCTATTGTTTCTTTCATAAGGGATTGGTCCCTGGCCTCTGCTTCGGTGCGGGTCTTGGAATTACTGTCTTTGGGATGGCCTACATGTTTGTACACGATGGATTGGTTCATAAAAGATTCCCTGTGGGCCCCATTGCCAACGTGCCCTATTTCAGAAGAGTGGCCGCTGCTCACCAACTTCACCATTCGGAGAAATTCGATGGGGTGCCATATGGGCTGTTTTTGGGACCAAAGGAAGTTGAAAAGGTGGGAGGGCTAGAAGAGCTGGAGAAAGAGATAAATAGGAGAATAAAAGCATCCAAAAATAGTTCATGA 900 0.5011 MAVGLSAAITLKPLHRFHQPHFPKPTPTLPFSPLRTSPRTHRLSNFTVCVLMQDPKQGSHIEIEPPEQPLSPQQVPVSAKLAEKLARKESERFTYLVAAVMSTFGITSMAVLAVYYRFSWQMEGGDVPWAEMFGTFALSVGAAVGMEFWARWAHEALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLAYCFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRRVAAAHQLHHSEKFDGVPYGLFLGPKEVEKVGGLEELEKEINRRIKASKNSS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00716 299 PANTHER BETA-CAROTENE HYDROXYLASE 23 298 - -
Cca08g00716 299 Pfam Fatty acid hydroxylase 142 269 IPR006694 GO:0005506|GO:0008610|GO:0016491
Cca08g00716 299 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 23 298 IPR045019 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00716 Cca-Chr8 13533484 13536444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00716 1 212 Chloroplast and Mitochondria Gene Families AT4G25700 64.352 6.51e-93 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00716 K15746 - gmx:100785541 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02219 02 42708499 42710648 Cca08g00716 08 13533484 13536444 ECH
Cca08g00716 08 13533484 13536444 Cca08g00716 08 13533484 13536444 ECH
Cca08g00716 08 13533484 13536444 Cca02g02219 02 42708499 42710648 PCT