Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00711 ATGTTCGTTTCTGACCCCAATTTTTATAATACGGGTGATGTGCATTCTGTGATTCAGAGTTTTGATTCAAGTTTCTCACTTGATTTATTATTTACTGTCATGGATCCCAATGTTTCTATTGATGATAAGGGTGAAAGTAGACTCTATATTGGTAACCTTGATTTTAGAATTACCGAAGCTGCTCTGCTTAAAATGTTTTCTCCTTATGGAAAGATCATTTCTGAGGACTTTTTATGGCACACGCGTGGCCCAAAACGTGGGGAGCCACGTGGTTTTGCCTTTATCCAGTACAGCTCAAAAGAGGAAGCAGAATTAGCCAAGGAGAAAATGCATGGGAGGTTAGCTTGTGGCCGGCCATTGGTTGTTCGTCTTGCTGGTGAGAAGTGCATGCTGGAAACAGCTGATAACTCTGCAAAAGCAGTGAGTGAAGTGCACAAGATGCATCTCACTAGTGGCGGTGGTGGTGGTGCCATGGGACAGACAAGTCGTAGTGCCAAAATAGCTGCTATTAAAAATAAATTGAAATCCTTAGAGGAGGAGAGTTCTAGGACCAAGAAGCAGAAGCAAAGTGAAAATATTTCTTGA 585 0.4188 MFVSDPNFYNTGDVHSVIQSFDSSFSLDLLFTVMDPNVSIDDKGESRLYIGNLDFRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSSKEEAELAKEKMHGRLACGRPLVVRLAGEKCMLETADNSAKAVSEVHKMHLTSGGGGGAMGQTSRSAKIAAIKNKLKSLEEESSRTKKQKQSENIS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00711 194 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 120 IPR000504 GO:0003723
Cca08g00711 194 SUPERFAMILY RNA-binding domain, RBD 35 128 IPR035979 GO:0003676
Cca08g00711 194 MobiDBLite consensus disorder prediction 175 194 - -
Cca08g00711 194 Gene3D - 43 149 IPR012677 -
Cca08g00711 194 PANTHER RNA-BINDING PROTEIN 18-RELATED 34 191 - -
Cca08g00711 194 SMART rrm1_1 47 123 IPR000504 GO:0003723
Cca08g00711 194 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 127 IPR000504 GO:0003723
Cca08g00711 194 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 34 191 - -
Cca08g00711 194 CDD RRM_RBM18 47 125 IPR039157 -
Cca08g00711 194 Coils Coil 167 187 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00711 46 128 Eukaryotic Initiation Factors Gene Family AT1G71770 39.759 1.19e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00711 K24527 - gmx:100806572 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00711 08 13418769 13421417 Cca08g00711 08 13418769 13421417 ECH