Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00708 ATGTCATCGTCGGAGTTTTTCGCCGGAGGCAGTGGCTTCTCTGGCAGATCCACCATGAACAACCCCAACGCGGCTCCTTCCTCTGCCACCTCCAACCTCCACCCTCTCTACCGAACCCAGCAGAACCTCCCTGCAATGTTTCTAGATCCTTCCTCGCAGATCGCACAACACCAAACACCAACCTTCTTAGGTAGCAAACGCTCCCACACCGAATTCCAAACCTACAACCAAACcaacaacaaccacaaccacaaccacaaccacGTTCTCTCGAACTTCCTGCTTCGTTCTGTTAAGCCCCGAACCTCTTTCTCCCATAGCTCCCCTCTCTCACCCATGGATTTTCCTATTCCCGAATTACAACATCAAAGCCAAAACCAAAATCCTTCAGTTTACCACCACCAAACGCCGCGTTTTGGTGTTCCCTTACTCCACCAGCTCCGCCCTCAGCCCATTAACCTCCCCAACAACGGGCCCGGACACATGAATGGCCCAAATTTGGGTTACCGAAACTCGAATTTAGGTTTACCGCAGAACCGGGTTAACCTTTCTGTTCCTGGACCGGTTCACCGGAGTGAGCCGGAGAAGATCATGGACCACCGGCTTCAGGAATTGGAGAAGCAGCTTCTGGAAGACAACGATGAAGAAGGAGAAGCCGATGCTGCCTCCGTGATAACCACCAGCGAGTGGTCGGAGACTTATCAGAATTTAATCAGTCCCGGTCCCGGTCCGGTTCAGAAACCGGTTCCCACGACGACGTCGCCGACTTCTTCCACCACGTCGTCTACATCATCGTCTACTTCTGTTGCTTCGCCTGCCTCGGGATGCTCCAAACAGACGCTAATGGACGCCGCATATGCAATTGTTGAAGGAAAACACGATGTGGCTATGGAGATCCTGAACCGTTTCAATGGTTCTCTGAACCGTTCTGATAGGTTGACCGATTGCATGGTTTCAGCCTTGAAATCAAGGATGAATCCGGTGGAATATCCTCCACCGGTGGCTGACCTTTTCGCCAGAGAACACACCGAGTCGACTCAGCTGCTTCTGGAAAACTCGGTTTGCTTCAAGGTAGGGTTCATGGCTGCGAATCTCGCGATCCTCGAAGCCGCATTTGAGGAGAAAACAGACAACAGGTTCTGCGTGGTGGATTTCGAGATTGGACAGGGAATGCAATACATGCATCTCCTCAGCGCGGTTCCTGCCGGCGCCACGGTGAAGATCGTGGCGGTGGCGGAGAAAGGCGGCGAGGAGAGAGTCCTCGCGGTGGGGGAGATGCTGAGCCGGCATGCGGAGCGGCTGAGGATTGGATTCGAGTTTAAACTCATCGCAACTCAGAAACTCGCCGAGTTGACTCGCGAGTCCTTGGGATGTGACGCGGACGAGGTTCTCGCGGTGAACTTGGCGTACAAGCTGAACAGGATTCCCGACGAAAGCGTCTCCACTGAGAATCCTCGTGACGAGCTTCTTCGGCGCGTGAAGCGACTCGCCCCGCGCGTGGTGACTGTGGTGGAGCAGGAAATGAACGCTAACACAGCGCCGTTTTTGGTGCGCGTGGCGGAAACGCTTTCTTACTACGGCGCGTTGTTGGAATCCATTGACAACAACCCTGACAGAGTCAAGGTCGAGGAAGGACTGAGTCGTAAACTGTGTAACTCGGTGGCGTGTGAGGGAAGGGACCGGGTGGAGCGTTGCGAGGTTTTCGGGAAATGGCGCGCGCGTATGAGCATGGCGGGGTTTCAGCTGAAGCCACTGAGTCAAACCATTGCCGAGTCAATTAAATTGCAACTCGCTTCGGGTAACACCCGTGTCAACTCGGCACTCACCGTGAAGGAAGAGAATGGTGGGATTTGCTTTGGTTGGATGGGAAGAACACTCACAGTCGCATCAGCGTGGCGTTAA 1902 0.5326 MSSSEFFAGGSGFSGRSTMNNPNAAPSSATSNLHPLYRTQQNLPAMFLDPSSQIAQHQTPTFLGSKRSHTEFQTYNQTNNNHNHNHNHVLSNFLLRSVKPRTSFSHSSPLSPMDFPIPELQHQSQNQNPSVYHHQTPRFGVPLLHQLRPQPINLPNNGPGHMNGPNLGYRNSNLGLPQNRVNLSVPGPVHRSEPEKIMDHRLQELEKQLLEDNDEEGEADAASVITTSEWSETYQNLISPGPGPVQKPVPTTTSPTSSTTSSTSSSTSVASPASGCSKQTLMDAAYAIVEGKHDVAMEILNRFNGSLNRSDRLTDCMVSALKSRMNPVEYPPPVADLFAREHTESTQLLLENSVCFKVGFMAANLAILEAAFEEKTDNRFCVVDFEIGQGMQYMHLLSAVPAGATVKIVAVAEKGGEERVLAVGEMLSRHAERLRIGFEFKLIATQKLAELTRESLGCDADEVLAVNLAYKLNRIPDESVSTENPRDELLRRVKRLAPRVVTVVEQEMNANTAPFLVRVAETLSYYGALLESIDNNPDRVKVEEGLSRKLCNSVACEGRDRVERCEVFGKWRARMSMAGFQLKPLSQTIAESIKLQLASGNTRVNSALTVKEENGGICFGWMGRTLTVASAWR 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00708 633 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 66 632 IPR005202 -
Cca08g00708 633 MobiDBLite consensus disorder prediction 234 275 - -
Cca08g00708 633 MobiDBLite consensus disorder prediction 250 275 - -
Cca08g00708 633 MobiDBLite consensus disorder prediction 1 32 - -
Cca08g00708 633 PANTHER SCARECROW-LIKE PROTEIN 8 66 632 IPR030013 -
Cca08g00708 633 Pfam GRAS domain family 278 633 IPR005202 -
Cca08g00708 633 ProSiteProfiles GRAS family profile. 268 633 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00708 Cca-Chr8 13375925 13377826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00708 90 633 GRAS Transcription Factor Family AT5G52510 48.167 4.77e-146 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca08g00708 GRAS 1.1e-81 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00708 - - gmx:100808172 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00708 08 13375925 13377826 Cca08g00708 08 13375925 13377826 ECH
Cca08g00708 08 13375925 13377826 Cca02g02225 02 42759196 42760979 PCT