Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00706 ATGGTCTCTTTCATCCCTTGGTACTTTCTTTTGACTATCATGATCATTTCCCTTTTTAATCCAAACCTTAGTTTTGCAAAGCAATCCAAGATAAATGGCTTGAAAATGAATGTTATTGATCGATGTTGGAGATTAAATCCAGAATGGAGGAGGTATCGATCTCAATTAGCTACATGTTCTGTGGGCTATGCTGGAAAAATGACAAACAATATGGATAAAGACCTTGTCCATTATAAAGTTACTAACCTTGGTGATGATCCTATAAACCCCAAACCTGGCACCTTAAGGTATGGAGCTTCCATGATTCAAGGTAAAGTATGGATCACATTCCAAAGAGACATGCACATCAAACTTAAGAAACCCCTTCTAATTAGTAGTTTCACTACCATTGATGGTCGAGGTGTTAACGTCAACATTGCTGATAATGCATGTTTAATGATCTTTAAGGCCACAAATGTAATCATCCATGGAATTCGGGTTCATCATTGCAAACCTCAAGCCCCTGGGATCGTGATGGGGCCAGAAGGAAAAGTGATTCCTTTGGGCCATGTAGACGGGGATGCAATTAGATTGGTTACTGCTTCAAAGATTTGGATTGATCATAATACACTATATGATTGTCAAGATGGTTTACTTGATGTAACACGAGGTTCCACTGATGTGACTGTTTCCAATAATTGGTTCAAAAATCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGATATGTGAGAGACCAAAACATGAAAGTTACTGTTGTCTACAACCATTTTGGACCTAATTGTAATCAGCGTATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAACAATCTTTACCAAGGATGGGTACAATACGCCATTGGTGGAAGCATGGAACCTAGCCTCAAAAGTGAAGCTAACCTCTTTATAGCACCGAAAACAGGGAGTAAGGAGGTGACATGGAGAAAGGATAGTCATAAAAATTGGGATAGATGGGAATTTCATTCAGTAGGGGATGCTTTTGAAAATGGAGCTTCATTTACAATAACAAAAGGAGGAAATGTGCCAAAGCCGAATTATAGCAAGGAGCAAAGTTTTCAAGTTGTTGATGTCAAATATGTGAGATCATTGACACGCTCATCAGGCATGTTAAAATACAATAAAACTTCTATATCACCATAA 1167 0.3856 MVSFIPWYFLLTIMIISLFNPNLSFAKQSKINGLKMNVIDRCWRLNPEWRRYRSQLATCSVGYAGKMTNNMDKDLVHYKVTNLGDDPINPKPGTLRYGASMIQGKVWITFQRDMHIKLKKPLLISSFTTIDGRGVNVNIADNACLMIFKATNVIIHGIRVHHCKPQAPGIVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTVSNNWFKNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSEANLFIAPKTGSKEVTWRKDSHKNWDRWEFHSVGDAFENGASFTITKGGNVPKPNYSKEQSFQVVDVKYVRSLTRSSGMLKYNKTSISP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00706 388 SUPERFAMILY Pectin lyase-like 58 374 IPR011050 -
Cca08g00706 388 SMART amb_all 113 310 IPR002022 -
Cca08g00706 388 Pfam Pectate lyase 119 304 IPR002022 -
Cca08g00706 388 PANTHER PECTATE LYASE 3 383 - -
Cca08g00706 388 PRINTS Pollen allergen Amb family signature 59 76 IPR018082 -
Cca08g00706 388 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Cca08g00706 388 PRINTS Pollen allergen Amb family signature 185 206 IPR018082 -
Cca08g00706 388 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Cca08g00706 388 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Cca08g00706 388 PRINTS Pollen allergen Amb family signature 327 351 IPR018082 -
Cca08g00706 388 PRINTS Pollen allergen Amb family signature 358 381 IPR018082 -
Cca08g00706 388 PANTHER PECTATE LYASE 18-RELATED 3 383 IPR045032 GO:0030570
Cca08g00706 388 Gene3D - 36 380 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00706 Cca-Chr8 13265332 13266828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00706 67 314 Polysaccharide Lyase AT5G09280 72.984 3.09e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00706 K01728 - gmx:100780437 692.189