Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00704 atggaagagaatgaaaagaccatatttcttgatattgcatgtttcttcaagggagaggacaaacaatatgtgaaaatgatactagacggttgtgatctgcattcagatagtgggattggtgttctaatggataagtctctcatcactgtagaactgaacaagctttggatgcatgagttgctacaagaaatggctaaagaaattgttcgccgtgaatctcccaaagagcctggtaatcgtagcagactctggTTTCATGAGGATGTGCTTCATGTATTGGACCAAAATATGggaaccaataacatcgaaggaataaggctagatctacctgaaccaaataatgttgacataaatggaaaagcattggcaaatatgaaaaaacttagacttcttaagatcaataatgcacaTATTTCAGCTGACTTTCAATATTTATCTGATGAGCTAAGATTAATTGATTGGTCGGGGTACCCTTCTTCAACTCTTCCACAAAACTTTCACCCAAAGAGGCTAGTTTCTTTAAATCTGAGTCATGGTCGCATCAAAAACTTGTGGAAGGGAGTTAAGATATTCAGAGACTTGAAACTTGTATCCTTTACCTGCTGTGAGTACCTCACTGAAATTCCAGACTTCTCAATGATTCCAAACCTTGAGAGTCTCTGCCTAGAACACTGTAACAGGTTAACTAAGGTGCATGAGTCTGTTGGATCCCTTGATAAACTTGCTACTTTAAATTTCTTACTATGCTCCAATCTCAAGACTCTTCCAAGTTGTTTCAAGTTAAAATCTCTACATACTCTTATCCTTACTGGCTGCTCAAAAGTTAGAAAGTTTCCTGAGATTGTTGAGAGAATGGCACATCTTGAAGAACTCCTTCTCCAGGGTACTGCCATAAAAGAACTACCACAGTCAATTGAATACCTTAATGGGTTGAAAGTCTTACTCTTAGATTCTTGCCAAATGCTAGAGCATCTCCCTAATAGCATTCACAGTTTGCAATGCCTTACTACACTTGGTCTCACCGACTGCCATAAGCTCAAGGAGCTTCCAAAACTTCCACCAAACACAAGATATTTAAACACAAGTAATTGCAAATCATTGGAAAGTTTACAAGCATTTTCCAACTCACCAAATTTCAGTGCAGGGAATTTACCAGTGTTTTCTGTAATGATGTTCATCAACTGCAATAAACTGATTAATAAACAGTTCCAGGACCACATAACAAATCTCTTGTATAATGAGGAGTTTGTTCATGAAGTTATGCTTCCAGGGAGCAACATCCCAGATTGGTTTCATCATCAGAGTACTAATAGTTCGATTTCTCTTATGGTGTCTTCAAGATTGTATGGTAAGATGGTGGAGTTGTTTTTTGGTGCAGTTTTGGAGTTGGACAAGGGTGATATTACAACTGGAATGTTTTCTTGTGGATACGAGGTTATTATCAACAATGAAAGGACATTTTTGATGGAAAGAAGGTTTGATTCATTGGACACGAGTCATGTGTGGCTGACTAAGAATAATTGTGGTTGTTTGATATGGCCACTCAACAGTATCCATCATTGGAATCACTTTAGGATTTCGTTTGGGGTATTTGAAGTCTCATCAAAGGTGAAAGTAAAAGCATCCCTGAAAAGCTGTGGTTTCCATATCTCGTCCAAGCAAGAAATGCATCTAATTGATCATGAAACAGTTAGAAATTTCCAATGCCACAAAGAATAG 1719 0.2973 MEENEKTIFLDIACFFKGEDKQYVKMILDGCDLHSDSGIGVLMDKSLITVELNKLWMHELLQEMAKEIVRRESPKEPGNRSRLWFHEDVLHVLDQNMGTNNIEGIRLDLPEPNNVDINGKALANMKKLRLLKINNAHISADFQYLSDELRLIDWSGYPSSTLPQNFHPKRLVSLNLSHGRIKNLWKGVKIFRDLKLVSFTCCEYLTEIPDFSMIPNLESLCLEHCNRLTKVHESVGSLDKLATLNFLLCSNLKTLPSCFKLKSLHTLILTGCSKVRKFPEIVERMAHLEELLLQGTAIKELPQSIEYLNGLKVLLLDSCQMLEHLPNSIHSLQCLTTLGLTDCHKLKELPKLPPNTRYLNTSNCKSLESLQAFSNSPNFSAGNLPVFSVMMFINCNKLINKQFQDHITNLLYNEEFVHEVMLPGSNIPDWFHHQSTNSSISLMVSSRLYGKMVELFFGAVLELDKGDITTGMFSCGYEVIINNERTFLMERRFDSLDTSHVWLTKNNCGCLIWPLNSIHHWNHFRISFGVFEVSSKVKVKASLKSCGFHISSKQEMHLIDHETVRNFQCHKE 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00704 572 SUPERFAMILY L domain-like 69 395 - -
Cca08g00704 572 Gene3D Ribonuclease Inhibitor 78 259 IPR032675 -
Cca08g00704 572 Pfam C-JID domain 422 555 IPR045344 -
Cca08g00704 572 Gene3D Ribonuclease Inhibitor 260 416 IPR032675 -
Cca08g00704 572 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 307 - -
Cca08g00704 572 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 307 IPR044974 GO:0006952
Cca08g00704 572 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 302 503 - -
Cca08g00704 572 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 302 503 IPR044974 GO:0006952
Cca08g00704 572 SUPERFAMILY "Winged helix" DNA-binding domain 2 93 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00704 Cca-Chr8 13228987 13231479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00704 1 350 WRKY Transcription Factor Family AT4G12020 40.599 1.89e-65 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00704 - - ccaj:109793662 1154.43