Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00700 ATGGCAGGTGAGGTAGGGGTGAAGAAGGAAGAGTCTCTGAACCTGAAAATCACTAACAAGAGCCATGTGAAGCCTGAGGAGAAGATTGGGAAGAAGGAGTACCAGTTGGTGACTTTTGATCTTCCCTATTTGGCCTTCTACTACAACCAGAAGCTCTTGTTTTACAAAGGGGAGGACTTTGAGGGCATGGTGCAGAAACTGAAAATTGGACTTGGTGTTGTGCTGAAGGAGTTTCACCAGCTAGCTGGTAAGCTAGGGACAGATGAAGAGGGGGTGTTCAGAGTGGAGTATGATGATGACATGCTTGGTGTGGAGGTTGTTGAAGCTGTTGCTGATGAGATTGGTGTGGATGATCTCACTGTGGCTGAAAGTACCAGCAATTTGAAGGAGCTTATACCCTATAGTGGTATCTTGAATTTGGAAGGCATGCATAGACCCTTGCTTGCAGTTCAGTTAACGAAGCTGAAAGATGGGCTTGCAATGGGCCTAGCGTTCAACCACGCTGTCTTGGATGGGACATCCACGTGGCAGTTCATGACCTCATGGGCCGAGATCTGCAGCGGCGCACCCTCCACAACAGCCCCACCCTTCCTGGACCGGACCAAGGCCCGGAACACGCGCGTGAAGCTGGACCTCTCGCTTCCCGAGCCCAACGGCCCACCCACTTCCAACGGCGAGGCAAAGCCCACGCCAGTACTAAGGGAAAAGATCTTCAAATTCTCCGAGTCCGCAATCGACAAGATCAAGTCAACGGTCAACGAGAACCCTCCATCGGACGGTTCTAAACCATTCTCAACATTCCAAGCTCTTTCCTCCCACGTGTGGCGCCATGTAAGCCATGCACGTAACCTGAAGCCGGAGGACTACACCGTGTTCACCGTCTTTGCCGACTGCCGGAAGCGGGTCGACCCGCCGATGCCAGAGACCTATTTTGGAAACCTAATCCAAGCTATATTTACCGTGACGGCGGTTGGACTGTTGTCAGCCCATCCGCCGCAGTTTGGGGCTTCATTGGTCCAGAAGGCCATTGAAGCCCACAATGCTAAGGCTATTGACGAACGTAACAAAGAATGGGAAAGTGCACCCAAGATTTTTGAATTCAAAGATGCTGGGGTGAATTGTGTGGCTGTGGGAAGTTCCCCTAGGTTTAAGGTCTATGACATTGATTTTGGGTGGGGGAAGCCCGAAATTGTGAGGAGTGGGACCAATAACAAGTTTGATGGGATGATTTATTTGTACCCGGGGAAGAGTGGAGGGAGGAGCATTGATGTGGAACTAACCTTGGAGCCTGAGGCTATGGGGAGGTTGGAGCAAGATAAGGGTTTTCTTTTGGAAGCATAA 1341 0.5086 MAGEVGVKKEESLNLKITNKSHVKPEEKIGKKEYQLVTFDLPYLAFYYNQKLLFYKGEDFEGMVQKLKIGLGVVLKEFHQLAGKLGTDEEGVFRVEYDDDMLGVEVVEAVADEIGVDDLTVAESTSNLKELIPYSGILNLEGMHRPLLAVQLTKLKDGLAMGLAFNHAVLDGTSTWQFMTSWAEICSGAPSTTAPPFLDRTKARNTRVKLDLSLPEPNGPPTSNGEAKPTPVLREKIFKFSESAIDKIKSTVNENPPSDGSKPFSTFQALSSHVWRHVSHARNLKPEDYTVFTVFADCRKRVDPPMPETYFGNLIQAIFTVTAVGLLSAHPPQFGASLVQKAIEAHNAKAIDERNKEWESAPKIFEFKDAGVNCVAVGSSPRFKVYDIDFGWGKPEIVRSGTNNKFDGMIYLYPGKSGGRSIDVELTLEPEAMGRLEQDKGFLLEA 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00700 446 Gene3D - 12 213 IPR023213 -
Cca08g00700 446 PANTHER BAHD ACYLTRANSFERASE DCR-RELATED 18 442 - -
Cca08g00700 446 Pfam Transferase family 15 440 - -
Cca08g00700 446 Gene3D - 216 439 IPR023213 -
Cca08g00700 446 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 18 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00700 Cca-Chr8 13151030 13154603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00700 13 445 Monolignol Biosynthesis Gene Families AT5G48930 25.934 1.11e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00700 K19747 - gmx:100818158 851.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00700 08 13151030 13154603 Cca08g00700 08 13151030 13154603 ECH