Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00697 ATGGCTCTAGCTCCAGTTCCAAAACTTGTCCTTGGTTCAGTTGCCTTTGCAGTCTTCTGGGTGTTAGCAGTTTTCCCTGCTGTGCCTTTTCTCCCCATTGGGAGAACTGCAGGTTCCCTTCTTGGTGCAATGCTCATGGTCATATTCCGAGTTCTTACCCCGGATCAAGCCTACGAAGCGATCGATCTTCCCATTCTCGGCCTTCTTTTTGGCACAATGGTTGTCAGTGTCTACCTTGAAAGAGCTGACATGTTCAAATACATTGGAAAATTACTCTCTTGGAAGAGTAAAGGAGCCAAGGACTTGCTTTGCAGAATCTGTCTCATTTCTGCTGTCTCAAGTGCACTATTCACTAATGACACTGCCTGTGTTGTTTTGACAGAGTTCATTTTGAAAATTGCAAAGCAGCATAATCTACCACCACACCCTTTGCTACTTGCACTTGCTACTAGTGCTAATATTGGTTCTGCTGCAACTCCTATTGGCAACCCCCAAAATTTGGTTATAGCTGTTCAGGGTAAAATATCATTTGGAAAGTTTCTGATTGGTGTTCTTCCAGCTATGCTTGTTGGGGTTTTGGTGAATGCTATGATTCTCATGGTAATGTATTGGAGGGTGTTGTCTATTCAGAAGGATGAAGAGGATCCAATAGCAGATCATGCAGCAGAGGAAGAGGTTAATTCCCATCAGTTTTCTCCAGCTACTATGTCTCATTTTAACTCATTCAATTCTCAAGAATGGAATGCACGTGTGGAGAGTTTTAACATTCAAAGTTCTCCTCAAGTTCATAGTCTGCGAAACCGGTCAACGGCAAGTGACGGTGAAATTGACAGGGTACTTAGTAACACATTGGATTCCAGAAGAAACTCTAATGCATCAAAGGAAGACACAAACGGTATGGCTATGCCTTCTCAGACAGTGGAGGAAACTAGTCCTTCAAAAGGTGATGCAAATGCAATAGTGCATAAACCAATAGAAGCACATGTTTTGCTCACTTCGGAAGAAAAGGACTTTGTAAGTGTAAGATGGAAATATGTACTGTGGAAATCATGTGTTTACATAATCACATTAGGAATGTTGGTTGCAATGCTTCTTGGTTTGAATATGTCATGGACAGCTATTTCAGCTGCACTAGCTTTGGTAGTTCTTGATTTCAAAGATGCTATGCCAAGCCTAGAGAAGGTTTCATATTCACTTTTGATATTCTTTTGTGGAATGTTCATCACAGTAGATGGCTTCAATAAAACTGGGATTCCTGGTGCTCTTTGGGATGTCATGGAGCCTTATTCTAGAGTAAATAGTGCTAGTGGAATAGCAATACTTGCTCTAGTTATACTCATCCTATCAAATGTTGCTTCAAATGTACCTACTGTTCTATTGCTTGGAGGACCAGTTGCAGCCTCAGCTGCTGCAATTTCCCCAGATTATGAGAAGAAAGCATGGCTCATATTGGCTTGGGCCAGCACAGTTGCAGGAAACCTCTCACTGTTGGGATCAGCTGCTAACTTGATAGTGTGTGAACAAGCTCGCCGTGCCCCTAACATTGCATACACACTAACCTTCTGGAACCATCTCAAATTTGGTCTTCCATCAACTCTTGTAATCACTGCTATTGGTTTGACACTCATAAGATGA 1635 0.4202 MALAPVPKLVLGSVAFAVFWVLAVFPAVPFLPIGRTAGSLLGAMLMVIFRVLTPDQAYEAIDLPILGLLFGTMVVSVYLERADMFKYIGKLLSWKSKGAKDLLCRICLISAVSSALFTNDTACVVLTEFILKIAKQHNLPPHPLLLALATSANIGSAATPIGNPQNLVIAVQGKISFGKFLIGVLPAMLVGVLVNAMILMVMYWRVLSIQKDEEDPIADHAAEEEVNSHQFSPATMSHFNSFNSQEWNARVESFNIQSSPQVHSLRNRSTASDGEIDRVLSNTLDSRRNSNASKEDTNGMAMPSQTVEETSPSKGDANAIVHKPIEAHVLLTSEEKDFVSVRWKYVLWKSCVYIITLGMLVAMLLGLNMSWTAISAALALVVLDFKDAMPSLEKVSYSLLIFFCGMFITVDGFNKTGIPGALWDVMEPYSRVNSASGIAILALVILILSNVASNVPTVLLLGGPVAASAAAISPDYEKKAWLILAWASTVAGNLSLLGSAANLIVCEQARRAPNIAYTLTFWNHLKFGLPSTLVITAIGLTLIR 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00697 544 Pfam Citrate transporter 27 491 IPR004680 GO:0016021|GO:0055085
Cca08g00697 544 PANTHER TRANSPORTER ARSB-RELATED 1 544 - -
Cca08g00697 544 PANTHER TRANSPORTER ARSB-RELATED 1 544 - -
Cca08g00697 544 MobiDBLite consensus disorder prediction 276 313 - -
Cca08g00697 544 MobiDBLite consensus disorder prediction 276 316 - -
Cca08g00697 544 CDD YbiR_permease 28 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00697 Cca-Chr8 13056864 13061776 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00697 - - ccaj:109818851 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02230 02 42832786 42839258 Cca08g00697 08 13056864 13061776 PCT