Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00694 ATGCCTTCATGGTGGACGAAATCCTCGTCAAAAGAAACCAAGAAGAAAGCAAATAAGGAGAGTTTTATTGGCGCATTTCACCGTAAATTTAAAACCCCATCTGAAGGTAAACCAAGCAGTAGATCTGGAGGATCTCGTAGACGTTGCAATGACTCAATTTCAGAGAAAGGTGGCGAGTCTCCTGAATCAAGATCTCCTTCGCCTTCCAAAGTCGCAAGGTGTCAAAGTTTTGCTGAAAGGCCCCATGCTCAGCCACTACCACTTCCTGGCCGGCACCCATCAAATATAAGCCGAGCAGATTCTGAAATTAGCATATCATCTAAATCAAGACTTGAGAAGGGCTCAAAATCATCATTGTTTCTTCCGCTACCAAAACCAGCATGCATGCGTAGTAGGCTTAACCCTGCAGATTTGGATGGAGATCTGGTCACTGCTTCTGTCTCTAGTGAGAGCTCTGCTGATAGTGATGAACCAGTGGACTCTCGCAGTCGTAGTCTTCTGGCAACTGACTGTGAGACTGGGACTAGAACTGCTGCAGGAAGTCCTTCCAGCTTGATGCTCAAGGATCAATCATCTGCTGTTTCCCAAATAAATTCAAGAGAAGCCAAAAAACCGGCAAACATTCTGGGTAATCATACATCTTCTACTTCACCAAAACGGAGGCCTTTAAGCAACCATGTTTCAAATCTGCAGATTCCTCCTCATGGTGCCTTCTGCAGTGCGCCTGACAGTTCCAGATCAAGTCCATCAAGAAGTCCATTGAGAGCATTTGGTGCAGAACAGGTTTTGAACTCTGCTTTTTGGTCTGGAAAGCCATACTCAGAGGTCAATTTAGGTGGATCCGGGCACTGCTCAAGTCCAGGTTCTGGTCACAATTCTGGGCATAATTCAATGGGAGGGGACATGTCAGGGCAGTTATTTTTGCAACCTAGCAGGGGTAGCCCTGAATATTCTCCTGTACCTAGTCCCAGAATGACTAGTCCTGGTCCAAGCTCTAGAATTCAGAGTGGAGCTGTTACACCTATTCATCCAAGAGCTGGGGTAACACCCAATGAATCTCAGACAGGACGGGTTGATGATGGAAAACAACAGAGTCATCGTTTGCCCCTTCCTCCCTTAGCAGTTACAAATACCATGCCTTTCTCTCATTCAAATTCTGCAGCAACTTCTCCATCCATGCCAAGAAGTCCCGGAAGAGCAGATAATCCAATAAGCCCTGGATCACGTTGGAAAAAAGGAAAGCTGATTGGCAGAGGCACATTTGGACATGTCTATGTTGGCTTTAATAAGGAAAGTGGTGAAATGTGTGCTATGAAAGAGGTAACTCTGTTTTCAGATGATGCCAAATCTAAAGAAAGCGCTAAGCAATTAATGCAGGAAATTACCTTGTTGAGCCGATTAGGGCATCCAAATATTGTGCAGTATTATGGTTCTGAAACAGTAGGTGACAAGCTTTACATATATCTAGAGTATGTTGCTGGAGGCTCCATATATAAACTACTTCAAGATTATGGAAAATTTGGTGAACTAGCTATCCGTAGTTTTACTCAACAAATTTTATCAGGACTTGCTTATTTACATGCGAAAAATACTGTCCACAGGGACATCAAAGGAGCCAATATACTGGTTGATCCCAATGGCCGGGTTAAGGTGGCAGACTTTGGCATGGCAAAGCATATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCCTATTGGATGGCTCCTGAGGTTATAAAAAACTCCAATGGTTGCAACCTTGCTGTTGATATATGGAGCCTTGGATGCACGGTTTTAGAAATGGCTACAACTAAACCTCCTTGGAGTCAGTATGAAGGGGTTGCTGCCATGTTCAAGATTGGTAATAGCAAGGAACTCCCAACAATCCCGGAAGACCTCTCTAGTGAAGGAAAGGATTTTGTTAGGAAATGCCTACAACGTAATCCGCACAATCGCCCTTCAGCCAGTGAACTATTGGACCATCCTTTTGTAAAATGTGCTGCACCTTTAGAAAGACCTATTCTGGGTCCTGATGCTTCTTCAGACCCAGCAGTATCTGGGATCACACAAGGAGTTACAGCTCTGGTAAAGAAGCTTTTTCCAACACAAATTGTATAA 2124 0.4416 MPSWWTKSSSKETKKKANKESFIGAFHRKFKTPSEGKPSSRSGGSRRRCNDSISEKGGESPESRSPSPSKVARCQSFAERPHAQPLPLPGRHPSNISRADSEISISSKSRLEKGSKSSLFLPLPKPACMRSRLNPADLDGDLVTASVSSESSADSDEPVDSRSRSLLATDCETGTRTAAGSPSSLMLKDQSSAVSQINSREAKKPANILGNHTSSTSPKRRPLSNHVSNLQIPPHGAFCSAPDSSRSSPSRSPLRAFGAEQVLNSAFWSGKPYSEVNLGGSGHCSSPGSGHNSGHNSMGGDMSGQLFLQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPRAGVTPNESQTGRVDDGKQQSHRLPLPPLAVTNTMPFSHSNSAATSPSMPRSPGRADNPISPGSRWKKGKLIGRGTFGHVYVGFNKESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLGHPNIVQYYGSETVGDKLYIYLEYVAGGSIYKLLQDYGKFGELAIRSFTQQILSGLAYLHAKNTVHRDIKGANILVDPNGRVKVADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPEDLSSEGKDFVRKCLQRNPHNRPSASELLDHPFVKCAAPLERPILGPDASSDPAVSGITQGVTALVKKLFPTQIV 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00694 707 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524
Cca08g00694 707 MobiDBLite consensus disorder prediction 279 411 - -
Cca08g00694 707 SUPERFAMILY Protein kinase-like (PK-like) 401 679 IPR011009 -
Cca08g00694 707 Pfam Protein kinase domain 411 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00694 707 MobiDBLite consensus disorder prediction 166 231 - -
Cca08g00694 707 CDD STKc_MEKK1_plant 409 666 - -
Cca08g00694 707 MobiDBLite consensus disorder prediction 1 253 - -
Cca08g00694 707 SMART serkin_6 410 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00694 707 ProSiteProfiles Protein kinase domain profile. 410 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g00694 707 MobiDBLite consensus disorder prediction 97 114 - -
Cca08g00694 707 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 686 - -
Cca08g00694 707 MobiDBLite consensus disorder prediction 9 58 - -
Cca08g00694 707 MobiDBLite consensus disorder prediction 279 312 - -
Cca08g00694 707 MobiDBLite consensus disorder prediction 377 396 - -
Cca08g00694 707 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 686 - -
Cca08g00694 707 Gene3D Transferase(Phosphotransferase) domain 1 408 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00694 Cca-Chr8 12915640 12923706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00694 1 677 MAP Kinase Kinase Kinase AT1G63700 67.500 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca08g00694 Pkinase 1.8e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00694 K20717 - gmx:100819762 1203.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00694 08 12915640 12923706 Cca02g02232 02 42850153 42861159 PCT