Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00680 ATGCCAATTGCAAAACTCAGAGCCTCTGGCACTCCAGATGTTATGAAAACAGAAGACAGAATAGATACCATAATCAGACAGGCAATTGGAAAAGAACCTTTTGTTTCTTTTCCAAGGGCCAGTGACAGCCCTGTACAGTGGATTCAATTACTCCATGCTTTAGATCCACAAGGTGTTAGCAATTCTTTTTCAGAATTTCCAGGGTGGCCTTTGCTCTCTCCTCTGAAGGTTCAGTTGCAGAAGTGTGACAAATGTACCCGAGAGTTTTGCTCCCCCATTAACTATAGAAGACATATACGTGTACATCATCGGTTAAAAAAGATTGATAAGGATTTTACAAAATCTAGGGATCTTTTAGGAGCATATTGGGATAAGCTATCTGTAGAAGAGGCAAAGGAAGTTGTATCATTCGAAAATGTGGCACTGGAGGAAGTTCCAGGTTCTTCAATTTTAAAATCTCTGACTACTCTAATTCAAAATCAAGGATTTTATTCACTTCCTCAGTATTATTTGATGGCTGGTGCTGCCCTTTTGGATATCGTTCAATCTAAACCTTCCAGTTTTCCTATATCATCCCAGGAGTTGTTCAGCATCCTTGATGATGCTAGTGAAAAAACATGTTTATGTGGGACAGCTGTGTCAATGCAAAGATATGTATTTGATGGAGAGGTTGGAAAAATTGGTCTTGAACCAAAAAATTTAGTTGCTTGCACAAGTTTCTTGCTAGAACAGAAATTGGTGAAGGCATGGCTTGCTGACAAGGATGCTGAAGCACTGAGGTGCCAGAAGCAATTGGTGGAGGAGGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTGGAGAGGAAACGCCTGAAGAAGATTAGACAAAAAGAACAGAAAGCTAGGGAACAAAGACACAAATCTGAGGCAGAAATTAAAGACAATATTGACATTGCTGTGAAGGCTTTATCACTGGCAGAAGCATCTTTAGATACATACAATTTTGAAGATCATAATCCAAATACATTTGCAGATAACTCAGCTTCAGATGTATCTTTCCAATGCCCTGACACCAATGAAGAAATAAATGGAGATACTCATTCAGAGCACGACTCTGTCACGGATCAGAATATTGAGGGAGATTCAGCAAATGGACCTAAACATCAACGTCTAGCAGTTGCCAGACAACAGGGGTTGCCAAAATCACCAAGGCCTGTTGCCACTGGTTTGCATACAAACCATAATTCTTCAATGTCAAAACCTGAAGTCATTCAGAAATATGGAACCCACTGTGATCAAAAGGCATCTACTATAGCTAATGGTGGTAAAGTATGGAGCCGGAAGTCTAAAACAGAAATAGACAAGGTGGTTTTAAAATCCATAAAAGAGAAAGAATCTGACCAGGTTAAGAATCAAGAAGTTTTGATAGGATCCATATCTGTTAATCTTGGCAATTGCAGCCAATCAGATGGTAATATGGTGGCTTCTCAAGAGAACTGCGTGGTTGAAAATGTGGCCAAGCAGAATAGTTCTCGAGATAAGCCAATGAAAACTGATTCTATCCTGAGTGGCAACAATCGCCCAACAGTTAAGCTTTGGAGGCCAGTTAGCCGGCTTGAAACTAAAGATCCACTTCCGGTTCAAAGTGGTGGGACAGAAATTGATGCAGCTCATGAAGATGGTCAAAATATGTCAGGTCCAAGTTTTTTAAGGGTGTGTAATACAGATGGCGGTGGCAATCTTGGCTTTGAAAAGAATTTCCCCCATGTAGAGGATACAGAGCATCCAGAAAGCTTGCGGTTGTTCTGCCGTGCTGCAAAAGCTTTTCTACAAAAAAGATGGGATGAAGCTATTGCATCCGAGGATGTGACAGTGCTTGTTTGCTCTGACACAGAATCTTCTGGTGAGTGCCAGGGGAGGGAGACACAGGATTTGAAAATTGAATCATGTCAATCTTCTGACGCGGAGAGATGCAACATTGTGGCAAATGCAGATAACAGAACCCCCAGGGTTACCAAATCCAAACCCAGATTGAAGAAGTCTGAAAAGGGAATCAAGACAAAGTATATTCCCAAACAGAAGACAGTAATTACCTAA 2079 0.4089 MPIAKLRASGTPDVMKTEDRIDTIIRQAIGKEPFVSFPRASDSPVQWIQLLHALDPQGVSNSFSEFPGWPLLSPLKVQLQKCDKCTREFCSPINYRRHIRVHHRLKKIDKDFTKSRDLLGAYWDKLSVEEAKEVVSFENVALEEVPGSSILKSLTTLIQNQGFYSLPQYYLMAGAALLDIVQSKPSSFPISSQELFSILDDASEKTCLCGTAVSMQRYVFDGEVGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKQLVEEEEAAQKRQAEILERKRLKKIRQKEQKAREQRHKSEAEIKDNIDIAVKALSLAEASLDTYNFEDHNPNTFADNSASDVSFQCPDTNEEINGDTHSEHDSVTDQNIEGDSANGPKHQRLAVARQQGLPKSPRPVATGLHTNHNSSMSKPEVIQKYGTHCDQKASTIANGGKVWSRKSKTEIDKVVLKSIKEKESDQVKNQEVLIGSISVNLGNCSQSDGNMVASQENCVVENVAKQNSSRDKPMKTDSILSGNNRPTVKLWRPVSRLETKDPLPVQSGGTEIDAAHEDGQNMSGPSFLRVCNTDGGGNLGFEKNFPHVEDTEHPESLRLFCRAAKAFLQKRWDEAIASEDVTVLVCSDTESSGECQGRETQDLKIESCQSSDAERCNIVANADNRTPRVTKSKPRLKKSEKGIKTKYIPKQKTVIT 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00680 692 MobiDBLite consensus disorder prediction 356 370 - -
Cca08g00680 692 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 689 - -
Cca08g00680 692 Coils Coil 285 305 - -
Cca08g00680 692 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Cca08g00680 692 MobiDBLite consensus disorder prediction 500 521 - -
Cca08g00680 692 MobiDBLite consensus disorder prediction 351 414 - -
Cca08g00680 692 Coils Coil 256 283 - -
Cca08g00680 692 ProSitePatterns Zinc finger C2H2 type domain signature. 82 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00680 Cca-Chr8 12631851 12643628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00680 19 688 C2H2 Transcription Factor Family AT4G25610 40.680 1.35e-141 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca08g00680 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00680 - - ccaj:109799844 1380.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00680 08 12631851 12643628 Cca08g00680 08 12631851 12643628 ECH
Cca08g00680 08 12631851 12643628 Cca02g02237 02 42885574 42891846 PCT