LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca08g00677	ATGGCGCATAGGTTGCTCCGAGACCACGAAGCCGACGGTTGGGAGCGCTCCGATTTCCCCATCATCTGCGAATCCTGCCTCGGCGACAGCCCCTACGTTCGAATGACAAGAGCAGAGTATGACAAGGAGTGCAAAATTTGTACAAGGCCTTTCACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAGATCTGCCAGACATGTAGTAAATTGAAAAATGTCTGTCAAGTGTGCCTTCTGGATCTTGAATATGGACTACCAGTTCAAGTTCGGGACACGGCTCTTAGTATCGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCATGACCGCAGGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAAGTACGGCCAAATGATACTATCCTGAAGCTTCAAAGGACTACACCATATTACAAAAGAAATCGGGCGCATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCTGAGTGCCCTTATAGACATGAGATGCCTGTAACTGGGGAATTGTCTCAACAAAATATTAAAGACCGTTATTATGGGGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGACCACTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCCAGGGTCACTGAGCAGGACTTGCGGGATCACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTCACATACACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTTTCCAACAAACTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACATCGAAACCTGAATCAGATGGCTCTGATCAAGCAAGGCAGCAGGCCTCCGTTGCTCACAGTGGATTGTTACCTCGGGCAGTTATATCTCAGCAGCAGAACCAGGACCAAACCCAAGGAATGCTTTACTACAACAATCCACCACCTCTACAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGAGCTCTTATTCCATCACAGGATGGTCCTCCTAGTGGGCCTTCTGGGCCTGGGGAGAACAAGCCCAGTTTGGAGAAGCAGCAAATGCAACATTATCCTCGTCCAATGATGCCCCCTCCACCTGGCCAATATCATCATCAGTATTATCCTCCATATGGTTATATGCCACCAGCTCCTCCTTATCATCAGTACCCACCACCTGCATACAATTCTGCAGTGCCTCCATCCCAACCTCCTCCCTCAAATCATCCTTATCAGCAGCATTCTATGCAGCCAGGGTCTTCACAGACAGGAACTGGACAAGCCGCAGCTGCCCCAGTTGAAACTGGAACATCAACATCAGGGTCACAGCAGCAATGA	1461	0.475	MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMLYYNNPPPLQQERSYYPSMDPQRMGALIPSQDGPPSGPSGPGENKPSLEKQQMQHYPRPMMPPPPGQYHHQYYPPYGYMPPAPPYHQYPPPAYNSAVPPSQPPPSNHPYQQHSMQPGSSQTGTGQAAAAPVETGTSTSGSQQQ	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca08g00677	486	MobiDBLite	consensus disorder prediction	299	321	-	-
	Cca08g00677	486	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE	1	461	-	-
	Cca08g00677	486	SUPERFAMILY	CCCH zinc finger	159	182	IPR036855	GO:0046872
	Cca08g00677	486	PANTHER	PRE-MRNA-SPLICING FACTOR RBM22	1	461	IPR039171	GO:0003723
	Cca08g00677	486	Pfam	Torus domain	147	194	IPR032297	-
	Cca08g00677	486	MobiDBLite	consensus disorder prediction	334	486	-	-
	Cca08g00677	486	MobiDBLite	consensus disorder prediction	400	449	-	-
	Cca08g00677	486	Gene3D	-	149	209	-	-
	Cca08g00677	486	SUPERFAMILY	RNA-binding domain, RBD	222	310	IPR035979	GO:0003676
	Cca08g00677	486	ProSiteProfiles	Zinc finger C3H1-type profile.	157	184	IPR000571	GO:0046872
	Cca08g00677	486	MobiDBLite	consensus disorder prediction	450	486	-	-
	Cca08g00677	486	SMART	rrm1_1	229	297	IPR000504	GO:0003723
	Cca08g00677	486	MobiDBLite	consensus disorder prediction	334	360	-	-
	Cca08g00677	486	Gene3D	-	212	310	IPR012677	-
	Cca08g00677	486	CDD	RRM_RBM22	227	300	-	-
	Cca08g00677	486	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	230	288	IPR000504	GO:0003723
	Cca08g00677	486	MobiDBLite	consensus disorder prediction	304	320	-	-
	Cca08g00677	486	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	228	301	IPR000504	GO:0003723
	Cca08g00677	486	SMART	c3hfinal6	157	183	IPR000571	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca08g00677	Cca-Chr8	12568600	12573954	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca08g00677	215	289	Eukaryotic Initiation Factors Gene Family	AT1G49760	33.750	4.62e-07	50.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca08g00677	K12872		-	gmx:100779917	852.432