Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00672 ATGTTCAGGGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGACCACTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCCAGGGTCACTGAGCAGGACTTGCGGGATCACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTCACATACACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTTTCCAACAAACTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACATCGAAACCTGAATCAGATGGCTCTGATCAAGCAAGGCAGCAGGCCTCCGTTGCTCACAGTGGATTGTTACCTCGGGCAGTTATATCTCAGCAGCAGAACCAGGACCAAACCCAAGGAATGCTTTACTACAACAATCCACCACCTCTTCAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGAGCTCTTATTCCATCACAGGATGGTCCTCCTAGTGGGCCTTCTGGGCCTGGGGAGAACAAGCCCAGTTTGGAGAAGCAGCAAATGCAACATTATCCTCGTCCAATGATGCCCCCTCCACCTGGCCAATATCATCGTCAGTATTATCCTCCTCCATATGGTTATATGCCACCAGCTCCTCCTTATCATCAGTACCCACCTCCTGCATACAATTCTGCAGGGCCTCCATCCCAACCTCCACCCTCAAATCATCCTTATCAGCAGCCAGGGTCTTCACAGACAGGAACTGGACAAGCTGCAGCTGCCCCAGCTGAAACTGGAACATCAACATCAGGGTCACAGCAGCAATGA 861 0.4983 MFRVNDPVALKLLGKAGEMTTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMLYYNNPPPLQQERSYYPSMDPQRMGALIPSQDGPPSGPSGPGENKPSLEKQQMQHYPRPMMPPPPGQYHRQYYPPPYGYMPPAPPYHQYPPPAYNSAGPPSQPPPSNHPYQQPGSSQTGTGQAAAAPAETGTSTSGSQQQ 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00672 286 SUPERFAMILY RNA-binding domain, RBD 25 113 IPR035979 GO:0003676
Cca08g00672 286 MobiDBLite consensus disorder prediction 102 124 - -
Cca08g00672 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 104 IPR000504 GO:0003723
Cca08g00672 286 CDD RRM_RBM22 30 103 - -
Cca08g00672 286 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 2 263 IPR039171 GO:0003723
Cca08g00672 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 91 IPR000504 GO:0003723
Cca08g00672 286 Gene3D - 15 113 IPR012677 -
Cca08g00672 286 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 2 263 - -
Cca08g00672 286 MobiDBLite consensus disorder prediction 107 123 - -
Cca08g00672 286 SMART rrm1_1 32 100 IPR000504 GO:0003723
Cca08g00672 286 MobiDBLite consensus disorder prediction 203 256 - -
Cca08g00672 286 MobiDBLite consensus disorder prediction 257 286 - -
Cca08g00672 286 MobiDBLite consensus disorder prediction 137 286 - -
Cca08g00672 286 MobiDBLite consensus disorder prediction 137 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00672 Cca-Chr8 12498425 12499285 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00672 18 92 Eukaryotic Initiation Factors Gene Family AT1G49760 33.750 1.13e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00672 K12872 - gmx:100779917 432.95