Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00671 ATGTCAGAATCCAAGGAAGAAAATCATGACCTTCCTCCCAAGTCAAAGCCACTGGAGGAACATGGGTTTGCCATGGATTTTGACATTGGCCTTGAAAGTCCATGGCCCTTGGATCATGTCTCTTTGGTCTCCAACCCCATGTCTCCTTTTCTCCTATCCACTATCTCTGAACAACCTTTTTCTCCTGTCTGGGCTTTTTCTGATGTTGAAGATGACAGACAAATCAGGATTGCAGCTTCAGGTAATACAAATACAACGAATGAAAATCCAGTTGAAAATGATGCCAACAAAAAAACTGTGTCACCCCTTGTAGCTCTTCCACCTTCAGAAAATCCAGATGGCTATTGTCTAATCAAGGAAAGAATGACACAAGCGCTTCGCCACTTCAAAGAGTTGACTGAACAGAATGTTCTTGCTCAGGTTTGGGCACCTGTGAGGAATGGCAACCGCTATGCACTTACAACTTCAGGCCAACCATTTGTGCTTGATCCACATAGTAATGGACTCCACCAGTACAGAACAGTCTCCTTGATGTATATGTTTTCTGTGGATGGGGAGAATGATGAAATCCAAGGCCTTCCCGGTCGAGTTTTTCAGCACAAAATTCCAGAATGGACTCCCAATGTTCAGTATTATTCCAGCAAGGAGTATCAGCGCCTAAATCACGCACAACATTACAATGTTCGTGGAACCTTAGCTCTACCTGTGTTTGAGCCTGCTGGACAGTCATGTGTGGCTGTACTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGGCAGTTAATTTGAGGAGTTCAGAAATTCTGGAGCATCCATACAATCAGATTTGTAATGAAGACCGCCAATACGCGTTAGCTGAGATTTTGGAGATATTGACAGTTGTCTGTGAAACTCATAGCTTGCCTCTGGCGCAAACGTGGGTTCCATGTAAGCATCGGAGTGTTTTGGCACATGGTGGTGGTGTTAAGAAAAGTTGCTCAAGTTTTGATGGCTGTTGCATGGGGCAAGTCTGCATGTCTATAACTGAGGTAGCATTCTATGTAATAGATGCTCGTACATGGGGTTTCCATGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCCCACAAAATGTGCTTCTGTGGAAACATTACCCAATTCTGCAAAACTGAATATCCTTTAGTACATTATGCTATCATGTTTGGTTTAACCAGCTGTTTTGCAGTGTGCTTACAAAGTTCTCACACAGGAAATGATGAGTATGTGCTAGAGTTTTTTCTGCCTCCTATGATCACGGACTTTAATGAACAAAAGAGTTTGTTAGGATCCATATTGGCTACAATGAAGCCACATTTTCAGAGTTTTAAGATTGCTGCTGGTGTTGAACTCGAGGAGAATGGTTCAGTTGAAATTGTAGAAGCAATAAATGAAAGAGTTCATTTGAGGTTTGAATCCATTCCAATTACTCAATCTTCAAAGTCACCACCTAGACATGCCTTACCAAATATGGGGGAGGCGTTACCACCGGAGCCATCAGAACAGCAAATAATGGCATACTGCGATGACATAAATGATGGAGGGAGCCTTGGTGATAATGCAGGTGGACACATTGATCAAAACACTCTCTTAGAGACCAAAACCAAAAAAAAACCCTCAGAGAGAAAACGTGGAAAAGCCGAGAAATCAATTAGTCTTGATATTTTGCAACATTACTTCACAGGAAGCCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAGCGAATCTGTAGGCAGCATGGGATATCACGTTGGCCATCTCGAAAGATCAAAAAGGTTAACCGTTCCCTGTCCAAGCTCAAGTGTGTTATTGAATCAGTCCATGGTGCTGAAGGAGCATTTGGTTTAAATTCTCTAAGTACAAGTTCACTTCCCATTGCTGCTGGTTCCTTTTCTGAGCCTTCCACCTCAAACAAGTTCAACTGCCAAAACTCGTTGACTATTAGGCCATCAGAGCCTAAGACGGATGAAAATGATTTTGATGCTTCTAGAGCATCAGAAACCAACAGACAAATTGAGATGGGAGAACAATTCCTTGGAGCAAGGACACAAAGTCCTGAGAAACTGATTAATGATAAAGTTGGTACCATTCAGGAGATTGGCACTAAAGGCTCAAACAAATTGAGAACTGGGAGTGGCTCAAGTGAAGGCAGTGCAAATCCTACTCCTCATGGTTCATGCCAAGGAAGCCCCCCAAATGAAATTTCACCTACAAAAGATATATTCATAGCAGGCAACAATGAGCAATGTCTTGTGTTAAGGGGATCACTGGAATCAACACTGCTCTCAACTAGAACTAGTACACCAAACCGCCCAACTGCATACCCTATGCCTAACATTGTGGACACAACAGAACCTCAAGTGCCATTTGTAGGACAGCTACTTGAGGGTGCTGGTAGTTCTAAGGACTTGAGAAACCTATGTCCTTCAGCAGATGCTGTTTTGGAGGATCAGGTTCCAGAAGCTTGCAGGATGAATCCTCAACGTTCTGATTTGGCTCCTATGCAACACATGAATACTCTTTATAACAATGTGCCACCTTTTCCAGTTAGGAAAGGGGTGAAGAGTGTGACTATTAAGGCAACATATAAAGAAGATATCATAAGGTTTAAGGTCTCTTTGGACTGTGGTATTGTGGAATTAAAAGAGGAAATCGCCAAGAGATTGAAACTAGAGGTGGTGACATTTGATATCAAGTATCTGGATGATGATCATGAATGGGTTTTGATAGCATGTGATGCAGACCTGCTGGAGTGCATGGACATTTCAAGTTCATCTGGCAGCAACATAATCAGGCTTGTGGTGCATGATATACTGTCCATTCTTGGAAGCTCATGTGAGAGCTCAGGAGATTGGAAAGGTTGTATATAG 2967 0.4267 MSESKEENHDLPPKSKPLEEHGFAMDFDIGLESPWPLDHVSLVSNPMSPFLLSTISEQPFSPVWAFSDVEDDRQIRIAASGNTNTTNENPVENDANKKTVSPLVALPPSENPDGYCLIKERMTQALRHFKELTEQNVLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDEIQGLPGRVFQHKIPEWTPNVQYYSSKEYQRLNHAQHYNVRGTLALPVFEPAGQSCVAVLELIMTSQKINYAPEVDKICKALEAVNLRSSEILEHPYNQICNEDRQYALAEILEILTVVCETHSLPLAQTWVPCKHRSVLAHGGGVKKSCSSFDGCCMGQVCMSITEVAFYVIDARTWGFHEACVEHHLQQGQGVAGRAFLSHKMCFCGNITQFCKTEYPLVHYAIMFGLTSCFAVCLQSSHTGNDEYVLEFFLPPMITDFNEQKSLLGSILATMKPHFQSFKIAAGVELEENGSVEIVEAINERVHLRFESIPITQSSKSPPRHALPNMGEALPPEPSEQQIMAYCDDINDGGSLGDNAGGHIDQNTLLETKTKKKPSERKRGKAEKSISLDILQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAEGAFGLNSLSTSSLPIAAGSFSEPSTSNKFNCQNSLTIRPSEPKTDENDFDASRASETNRQIEMGEQFLGARTQSPEKLINDKVGTIQEIGTKGSNKLRTGSGSSEGSANPTPHGSCQGSPPNEISPTKDIFIAGNNEQCLVLRGSLESTLLSTRTSTPNRPTAYPMPNIVDTTEPQVPFVGQLLEGAGSSKDLRNLCPSADAVLEDQVPEACRMNPQRSDLAPMQHMNTLYNNVPPFPVRKGVKSVTIKATYKEDIIRFKVSLDCGIVELKEEIAKRLKLEVVTFDIKYLDDDHEWVLIACDADLLECMDISSSSGSNIIRLVVHDILSILGSSCESSGDWKGCI 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00671 988 MobiDBLite consensus disorder prediction 684 698 - -
Cca08g00671 988 MobiDBLite consensus disorder prediction 545 575 - -
Cca08g00671 988 MobiDBLite consensus disorder prediction 675 703 - -
Cca08g00671 988 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 983 - -
Cca08g00671 988 ProSiteProfiles PB1 domain profile. 888 970 IPR000270 GO:0005515
Cca08g00671 988 ProSiteProfiles RWP-RK domain profile. 562 645 IPR003035 -
Cca08g00671 988 PANTHER PROTEIN NLP8 3 983 IPR045012 GO:0003700
Cca08g00671 988 CDD PB1_NLP 889 969 IPR034891 -
Cca08g00671 988 Gene3D - 886 969 - -
Cca08g00671 988 SMART PB1_new 888 970 IPR000270 GO:0005515
Cca08g00671 988 MobiDBLite consensus disorder prediction 727 771 - -
Cca08g00671 988 Pfam RWP-RK domain 578 625 IPR003035 -
Cca08g00671 988 MobiDBLite consensus disorder prediction 730 771 - -
Cca08g00671 988 SUPERFAMILY CAD & PB1 domains 888 973 - -
Cca08g00671 988 Pfam PB1 domain 889 969 IPR000270 GO:0005515
Cca08g00671 988 MobiDBLite consensus disorder prediction 557 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00671 Cca-Chr8 12491215 12495595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00671 252 983 NLP Transcription Factor Family AT4G24020 51.282 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Cca08g00671 PB1 3.4e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00671 - - gmx:100780901 1716.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00671 08 12491215 12495595 Cca02g02243 02 42937567 42942491 PCT