Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00658 ATGCCACCTTCACCCAATACACATCTATATATATATATcaacattcaacacgaaacaacacaaacccattctccaacacaacacaaaatacatttcacacaaAAACCAATGGAAACCGCCACAACACTCACCGGCCTGCTCCGCCACGTGGCCACCAAATTCCCCTCCCGCCGCGCCCTCTCCGTCGCCGCTAAATTCGACCTCACCCACTCCCACCTCCACCATCTCTCCGAATCCGCCGCCGCCCGCCTTGTCGCCGCCGGAATAAAACCCGGCGACGTCGTGGCCCTCACCTTCCCAAACACCGTCGAGTTTGTTGTCATGTTCCTAGCCGTCATTCGAGCGCGAGCCACAGCCGCGCCGCTTAATTCGGCTTACACAGCCGAAGAGTTCGAGTTTTACCTATCCGACTCCGAATCCAAGCTTCTGATTACGTCATCAGAAGGAAACAACGCGGCTCAATCCGCAGCTTCCAAACTCAACATCCCTCACGGCGCGGCTTCTATCACCCAAGCCGAGAATCAAGAACCCGCGCTGAGCCTCTCGTTAACCCAACCCGAGTCAACCGACTCGGTTGAGTCACTCATTAACGACCCTGCTGACGTGGCGCTTTTCCTTCACACCTCGGGAACCACGAGCCGTCCTAAGGGAGTTCCGCTGACTCAGCACAACTTGCTCTCTTCCGTCAACAACATTAAGTCCGTGTACCGACTCACTGAGTCCGACTCGACGGTCGTCGTTCTTCCGCTTTTCCACGTGCACGGGCTGATCGCCGCGCTGCTCAGCTCCCTcggcgccggcgcggcggtggcgctcccggcggcggGGAGGTTCTCCGCCTCGGCGTTCTGGAAGGACATGGTGAAGTACAACGCCACGTGGTACACCGCGGTTCCCACCATACACCAGATTATACTCGACCGCCACTCGAACAACCCCGAACCGGTTTACCCGCGGCTCCGGTTCATCCGAAGCTGCAGCGCGTCGCTCGCACCGGCTATTCTGGGTAAGCTGGAGGAGGCGTTCGAGGCGCCGGTGCTGGAGGCTTATGCGATGACGGAAGCGTCGCATCTGATGGCCTCGAATCCTCTGCCGCAAGATGGGCCGCACAAGGCCGGGTCCGTTGGGAGGCCCGTGGGCCAGGAGATGGTTATTTTGGACCAAACGGGTCGGGTCCTGGAGGCTGAAGTTAGCGGCGAAGTTTGCATTCGGGGCCCCAATGTTACGAAGGGTTATAAAAACAACGTGGAAGCCAATACGGCGGCGTTTCTCTTTGGTTGGTTTCACACCGGCGATGTTGGGTATTTGGATTCCGATGGATATTTGCATCTCGTGGGTCGGATCAAGGAACTCATCAACCGTGGAGGTGAAAAGATATCACCAATAGAAGTGGATGCTGTCCTTCTTTCACATCCAGACATTGCTCAAGCGGTTGCTTTCGGAGTGCCTGATCCCAAGTATGGGGAGGAGATACATTGTGCTGTCATTCCAAGAGAAGGATCAAACGTTGATGAAACAGAGGTGCTAAGATATAGCAAGAAGAATCTTGCATCTTTCAAAGTTCCCAAAAAGGTCTTTATTACCGATTCTTTGCCCAAAACTGCCACAGGAAAGATTTTGCGTCGTCTTGTGGCAGAACATTTCGTTTCTCAAATTTGA 1659 0.5142 MPPSPNTHLYIYINIQHETTQTHSPTQHKIHFTQKPMETATTLTGLLRHVATKFPSRRALSVAAKFDLTHSHLHHLSESAAARLVAAGIKPGDVVALTFPNTVEFVVMFLAVIRARATAAPLNSAYTAEEFEFYLSDSESKLLITSSEGNNAAQSAASKLNIPHGAASITQAENQEPALSLSLTQPESTDSVESLINDPADVALFLHTSGTTSRPKGVPLTQHNLLSSVNNIKSVYRLTESDSTVVVLPLFHVHGLIAALLSSLGAGAAVALPAAGRFSASAFWKDMVKYNATWYTAVPTIHQIILDRHSNNPEPVYPRLRFIRSCSASLAPAILGKLEEAFEAPVLEAYAMTEASHLMASNPLPQDGPHKAGSVGRPVGQEMVILDQTGRVLEAEVSGEVCIRGPNVTKGYKNNVEANTAAFLFGWFHTGDVGYLDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDPKYGEEIHCAVIPREGSNVDETEVLRYSKKNLASFKVPKKVFITDSLPKTATGKILRRLVAEHFVSQI 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00658 552 Pfam AMP-binding enzyme C-terminal domain 463 538 IPR025110 -
Cca08g00658 552 Gene3D - 448 550 IPR045851 -
Cca08g00658 552 Gene3D - 41 447 IPR042099 -
Cca08g00658 552 CDD FACL_fum10p_like 55 546 IPR045310 GO:0016874
Cca08g00658 552 ProSitePatterns Putative AMP-binding domain signature. 205 216 IPR020845 -
Cca08g00658 552 PANTHER ACYL-COA SYNTHETASE 37 552 - -
Cca08g00658 552 PANTHER OXALATE--COA LIGASE-LIKE 37 552 - -
Cca08g00658 552 Pfam AMP-binding enzyme 48 454 IPR000873 -
Cca08g00658 552 SUPERFAMILY Acetyl-CoA synthetase-like 28 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00658 Cca-Chr8 12049466 12053686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00658 36 552 Monolignol Biosynthesis Gene Families AT4G05160 29.740 6.63e-58 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00658 K22133 - gmx:100779306 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02253 02 43102715 43107479 Cca08g00658 08 12049466 12053686 ECH
Cca08g00658 08 12049466 12053686 Cca08g00658 08 12049466 12053686 ECH