Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca08g00650 | ATGCACCGAGGGAGAGCCGCTGCCGCCCACCACCACCCTCTGCCCAAGGAGACGCGCTTTCGCGGCGTCAGGAAGCACCCCTGGGGCCGCTTCGCAGCCGAGATTCGAGATCCCTGGAAGAAGTCGCTCGTCTGGCTCGGCACCTTCGATTCCACCGAGGATGCTGCCCGGTCCTACGACAATGCCGCCCAATCCTTCCGTGGGCCTGAGTCCGACCAGATTCCCCTCTACCAGGCCCACGACTTCTCCAAGTTCGAGCCCGTGGTCCAGGTGAATCGGCCCACCACCAGCGGCATGAGCAGCACCGTGGAGTCCTTCAGCGGGCCTAGGATTCTCCCATTCGGTTTTCCCACACTTTCTCGCCGTGATTTTCTCCTCCGCAGCGCCGCGCCGAGCTCGGCGACTTCTCAGTCACCGGAATCTGCGGAGCGTCCCCCTGATTCCTCGATCGTTTCGTTTCGCCGCGACCTAGCGACAAGCGACGGTATCCAACTACAGCTACAACAAGGTAGCGGTGATGGCGACGACGCAGTTCTCGGCGGCAGATAG | 549 | 0.6284 | MHRGRAAAAHHHPLPKETRFRGVRKHPWGRFAAEIRDPWKKSLVWLGTFDSTEDAARSYDNAAQSFRGPESDQIPLYQAHDFSKFEPVVQVNRPTTSGMSSTVESFSGPRILPFGFPTLSRRDFLLRSAAPSSATSQSPESAERPPDSSIVSFRRDLATSDGIQLQLQQGSGDGDDAVLGGR | 182 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca08g00650 | 182 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 15 | 117 | - | - | |
| Cca08g00650 | 182 | Gene3D | AP2/ERF domain | 18 | 74 | IPR036955 | GO:0003700|GO:0006355 | |
| Cca08g00650 | 182 | ProSiteProfiles | AP2/ERF domain profile. | 19 | 83 | IPR001471 | GO:0003700|GO:0006355 | |
| Cca08g00650 | 182 | MobiDBLite | consensus disorder prediction | 130 | 145 | - | - | |
| Cca08g00650 | 182 | CDD | AP2 | 18 | 71 | IPR001471 | GO:0003700|GO:0006355 | |
| Cca08g00650 | 182 | Pfam | AP2 domain | 18 | 68 | IPR001471 | GO:0003700|GO:0006355 | |
| Cca08g00650 | 182 | SMART | rav1_2 | 19 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
| Cca08g00650 | 182 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 | 15 | 117 | - | - | |
| Cca08g00650 | 182 | SUPERFAMILY | DNA-binding domain | 19 | 70 | IPR016177 | GO:0003677 | |
| Cca08g00650 | 182 | MobiDBLite | consensus disorder prediction | 130 | 154 | - | - | |
| Cca08g00650 | 182 | PRINTS | Ethylene responsive element binding protein signature | 20 | 31 | IPR001471 | GO:0003700|GO:0006355 | |
| Cca08g00650 | 182 | PRINTS | Ethylene responsive element binding protein signature | 42 | 58 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca08g00650 | Cca-Chr8 | 11843136 | 11843864 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca08g00650 | 1 | 110 | AP2-EREBP Transcription Factor Family | AT1G50640 | 47.973 | 3.16e-29 | 106 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | AP2/ERF-ERF | Cca08g00650 | AP2 | 4.2e-12 | CL0081 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca08g00650 | K09286 | - | gmx:100812313 | 160.614 |