Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00645 ATGGAGTGTCAGCCACCAGAAAAAGCAAAACCAAAATACAGAAAGGGCTTATGGTCACCAGAAGAAGATAATAAGCTCAGAAACCATATCCTTAAGTATGGTCATGGCTGCTGGAGTTCTGTCCCCATTAAAGCCGGCTTGCAAAGAAATGGGAAGAGCTGCAGACTAAGGTGGATTAACTATCTGAGGCCAGGATTGAAGAGAGGGGTGTTCAGCAAACATGAGGAAGATACAATCTTGGCCCTTCACCACATGCTAGGCAACAAGTGGTCTCAGATAGCACAGCATTTGCCAGGAAGGACTGATAATGAGATAAAAAATTACTGGCATTCATATTTGAAAAAGAAACTGATCAAAGCTAAGGAAATGGAATGTGACAAACAAAATCAGTATGCTAGCTCAAGTTCAGATACAATGGACAACTCTCTCTCTCCCCAGAAACTTGCAACACAAGATCCAAGTTATGCGTTGTTAGAAAACATGGACAAATCAATAGAACACTCAGATAACTTTTTCTCACAAAGCTACAACTTTTCCAAGGAGGCTTGTCAGAGCTCCCTACCAAAGCTGTTATTTTCTGAGTGGCTTTCAATGGATAATGTAAATGGTGGAAGTGGAAGCTCAGTGAATTCTGATGATTCCTTGGTCTTGGGGAATGAATTTGATCAAAATTCAACTTTCCAAGATGCTGTAATGCATATGTTAGAAGAGAACTTTGTTGAAGAGTATCATAATACTCTAATTCACAGTTCAACAACCACTGAGGTGTACAATTCCGATATTAAGTCTTCAAATCAAGAGGATGGAAGTGATTTCATCCATTGTATTCCGGGGGCTGATTTATGTAGCAATTTCAGCCTAACCAATGGTGCAATGTAA 879 0.3993 MECQPPEKAKPKYRKGLWSPEEDNKLRNHILKYGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGVFSKHEEDTILALHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKKLIKAKEMECDKQNQYASSSSDTMDNSLSPQKLATQDPSYALLENMDKSIEHSDNFFSQSYNFSKEACQSSLPKLLFSEWLSMDNVNGGSGSSVNSDDSLVLGNEFDQNSTFQDAVMHMLEENFVEEYHNTLIHSSTTTEVYNSDIKSSNQEDGSDFIHCIPGADLCSNFSLTNGAM 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00645 292 CDD SANT 71 113 IPR001005 -
Cca08g00645 292 CDD SANT 18 62 IPR001005 -
Cca08g00645 292 PANTHER MYB TRANSCRIPTION FACTOR 1 288 - -
Cca08g00645 292 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Cca08g00645 292 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Cca08g00645 292 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Cca08g00645 292 Gene3D - 69 142 - -
Cca08g00645 292 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Cca08g00645 292 SMART sant 14 64 IPR001005 -
Cca08g00645 292 SMART sant 67 115 IPR001005 -
Cca08g00645 292 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca08g00645 292 PANTHER MYB DOMAIN PROTEIN 55 1 288 - -
Cca08g00645 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Cca08g00645 292 Gene3D - 15 67 - -
Cca08g00645 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00645 Cca-Chr8 11700823 11703571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00645 8 196 MYB Transcription Factor Family AT3G48920 54.497 8.01e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca08g00645 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00645 K09422 - gmx:100803537 518.464