Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00637 ATGGGCGTGAAGAATTTATGGGACATCCTCGAATCGTGCAAGAAAACGGTTCCCCTTCACCACCTACAGAACAAGAGGGTGTGCGTGGACCTCTCGTGCTGGATGGTGCAGCTTCACAGCGTCAGCAAGTCGCACGCCTGCGTCAAGGAGAAGGTGTACCTCAAAGGACTCTTTCACCGGCTCAGAGCACTCATTGCGCTCAATTGCAGCGTCGTCTTCGTCGCAGATGGATCAATTCCCGCCATCAAATTGTCAACCTATAGGCGTCGCTTAAATGTTGGAAAGGAGGTAGCACAAAATGAAACTAACTTACAGAAAGCTACTTCATTACGGAGAAACATGGGGTCTGAGTTTTCTTGCATGATCAAAGAGGCTAAAGTCTTGGGGATGGGTCTTGGCATTGCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAATTTTGAATCATTATGTGATGGGTGTTTCAGTTCAGATTCAGACACATTCCTTTTTGGTGCAAGGACAGTTTATAGGGATATCTGCCTTGGAGATGGTGGATATGTTGTTTGTTATGAGATGACAGATATTGAAAGAAAACTTGGATTTGGAAGGGACTCGTTGATTGCTCTCTCCTTGCTTCTTGGCAGTGATTATTATCAAGGAGTTCATGGTCTGGGTCCAGAGTCGGCGTGTCAGATTGTCAAATCGATTGGGGACAAATATGTTCTTAAAAAATTTGCATCTGAAGGACTTGAATGGGTGAAAAAAAGAAAAGGAGGTAAGAATGATTTACGGCAAGATGATAACATTTTACAAGTCATTAATGCTTATATGAAGCCAAAATGTCACCCAGCAGATTCAGATATTGTACACAAGGCTCTTGCTCAATATCCGTTTCAACGTACTGAACTCCAGCAGATATGTGCTGAGTTCTTTCAGTGGCCTTCAGAGAAAACAGATGGGTATATTCTTCCAAGTATAGCTGAAAGAGATTTACGACGATTTGCCAATTTGCGTTTAACTTCATCTGAAGTTGGATTGAACCTTCCTTTACATGAGatccctgtgAAGTGTCCTGTGTCAGAAGTCATTAAGAGTCGAAAAGTTCAAGGGAGAGAATGCTATGAGGTTTCTTGGGAAGGAATGGACGGACTTGAAAATTCAATAGTACCCGCAGATCTTTTAGAAAGTGCCTGTCGTGAGAAGATTTTGGTGTTCGAGGAAAGAAAAGCTCAACGGAAGAAACAGAATATTCATAAAAGAAGACCAAAGAAAAAGGAATCTACGTCAACTCTGGCTGAGCTTGATCTAAAACTTCAGAATTTGTTGCTTGATGATAATTTGAGAGACCAAGCCAACTTCAATGCCTCTGATACTTCAGGGAGGATATCTAGGATTACAACTACTATTGCTGAAGCTGATCCGTTGCATCTATCACATGACATAGAACACACTGGGTTGATTCAGAATATTAGCAACACTGATAGCAATGAGGCGGTTTCCAGTGTAGATAAAAACGAGATCATAGATCTTCTGAGCCCTTCCCCACCAAAGAAATCCAATTTTTCCTCAAAATGCCAGCAATCAAGTGACCAACATATTGAAGTGATTAATTTGAGTGATTCAGAAAATGATATGTCCGTTGAACACAAGCAGAAAGTGAAGGAGCTGAGATTGTTCTTAGCTAGTATTAGGAATGATATTCATTGA 1704 0.412 MGVKNLWDILESCKKTVPLHHLQNKRVCVDLSCWMVQLHSVSKSHACVKEKVYLKGLFHRLRALIALNCSVVFVADGSIPAIKLSTYRRRLNVGKEVAQNETNLQKATSLRRNMGSEFSCMIKEAKVLGMGLGIACLNGIEEAEAQCALLNFESLCDGCFSSDSDTFLFGARTVYRDICLGDGGYVVCYEMTDIERKLGFGRDSLIALSLLLGSDYYQGVHGLGPESACQIVKSIGDKYVLKKFASEGLEWVKKRKGGKNDLRQDDNILQVINAYMKPKCHPADSDIVHKALAQYPFQRTELQQICAEFFQWPSEKTDGYILPSIAERDLRRFANLRLTSSEVGLNLPLHEIPVKCPVSEVIKSRKVQGRECYEVSWEGMDGLENSIVPADLLESACREKILVFEERKAQRKKQNIHKRRPKKKESTSTLAELDLKLQNLLLDDNLRDQANFNASDTSGRISRITTTIAEADPLHLSHDIEHTGLIQNISNTDSNEAVSSVDKNEIIDLLSPSPPKKSNFSSKCQQSSDQHIEVINLSDSENDMSVEHKQKVKELRLFLASIRNDIH 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00637 567 CDD PIN_GEN1 2 198 - -
Cca08g00637 567 CDD CD_CSD 358 406 - -
Cca08g00637 567 Gene3D - 201 260 - -
Cca08g00637 567 SMART xpgineu 130 200 IPR006086 GO:0004518
Cca08g00637 567 SUPERFAMILY Chromo domain-like 357 412 IPR016197 -
Cca08g00637 567 Pfam XPG N-terminal domain 1 91 IPR006085 GO:0004518
Cca08g00637 567 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Cca08g00637 567 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Cca08g00637 567 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Cca08g00637 567 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Cca08g00637 567 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Cca08g00637 567 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 336 IPR036279 -
Cca08g00637 567 Gene3D - 355 423 - -
Cca08g00637 567 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Cca08g00637 567 ProSiteProfiles Chromo and chromo shadow domain profile. 356 416 IPR000953 -
Cca08g00637 567 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 469 IPR006084 -
Cca08g00637 567 Gene3D - 2 199 - -
Cca08g00637 567 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 469 - -
Cca08g00637 567 SMART xpgn3 1 97 IPR006085 GO:0004518
Cca08g00637 567 SUPERFAMILY PIN domain-like 2 215 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00637 Cca-Chr8 11537564 11545837 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00637 1 236 Core DNA Replication Machinery Family AT5G26680 24.806 5.05e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00637 K15338 - gmx:100806919 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00637 08 11537564 11545837 Cca08g00637 08 11537564 11545837 ECH