Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00628 ATGTCTAAACTTGGCGAATTCCACGCGAAACACTTCTCCTTGGCATTCATTTTTGTCGTGAGTCTCCAGCAGCAGGACCACGTCGACGCCCAATCCTCGATGGAGCCAGTCCCGACGTACATCACGCACCACAGCTGGGAGCCCTCGGTGGCCATCACGGTGGGCGCCATCATCCTGGCCCTCCTCCTCATGGCGGCCGTCTGCGTCTACCTGCGGCGCTGCGCGGAGTCCCGCGTCATCATCGCCAGGCGCACAACCGTCCCCTGCTCCTGCGCGCAGGGGATAAACGCGGAGCTCCTCAGCACGTTCCCCACGCTCTTGTACTCCAACGTCAGGCACCTCAGCAAAGGGAACCACACGCTCGAGTGCGCCGTCTGCTTGACGGACTTCACCGACAAAGACACGCTCCGCCTGCTCCCCAAATGCAGCCACGTCTTCCACCCTCACTGCATTGACTCCTGGCTCGCCTCGCACGTCACCTGCCCCGTTTGCCGCGCCAATCTCAGCGCCGACACGTGCCACCAGGTTGCCGTAACCCTCCCCAACGACGAACCTTCCCTTCACAACGCGCCCGCTGAGGAGAATCAACTTTGTCTTCGAGATTCCGCTTCGGCTAACGATAAAGTGGCTGAGGAGAATCAAATTTGTAACGACCGCTCCAAGGTAACAGAGGAGAATCAAGCACGTGTTCCGGATCTTGACTCGAGTAATGGGGTGACCAAAGTGGTGTGTTTAAGCGACAAGGTGTTGGAGTCAAATCCGCATTTTGATGCGAGGAGGAAGCTTTCGAGGTCGAACTCGACGGGGCATTCTCTTGTGGAGGCGGGGAAGTGTGTGGAGAGGTACACGTTGAGGTTGCCGGAGGATGTGAGGAGGTACATTCTGGTCAACCATGTTCAACGTTCCTCCAGTGTTAAGGAAACGTGTTGGAGTGACGGAGATGAGGGCTACACGGGGAAGAGGTGGGTGATTTGCACGCCGCCGTTTGTGGCGCCGCGCCATGGTGGTTGA 1011 0.5836 MSKLGEFHAKHFSLAFIFVVSLQQQDHVDAQSSMEPVPTYITHHSWEPSVAITVGAIILALLLMAAVCVYLRRCAESRVIIARRTTVPCSCAQGINAELLSTFPTLLYSNVRHLSKGNHTLECAVCLTDFTDKDTLRLLPKCSHVFHPHCIDSWLASHVTCPVCRANLSADTCHQVAVTLPNDEPSLHNAPAEENQLCLRDSASANDKVAEENQICNDRSKVTEENQARVPDLDSSNGVTKVVCLSDKVLESNPHFDARRKLSRSNSTGHSLVEAGKCVERYTLRLPEDVRRYILVNHVQRSSSVKETCWSDGDEGYTGKRWVICTPPFVAPRHGG 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00628 336 SUPERFAMILY RING/U-box 105 171 - -
Cca08g00628 336 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 305 - -
Cca08g00628 336 SMART ring_2 123 164 IPR001841 -
Cca08g00628 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 172 IPR013083 -
Cca08g00628 336 Pfam Ring finger domain 122 165 IPR001841 -
Cca08g00628 336 PANTHER RING FINGER DOMAIN-CONTAINING 8 305 - -
Cca08g00628 336 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Cca08g00628 336 CDD RING-H2_EL5_like 122 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00628 Cca-Chr8 11330795 11332496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00628 14 295 Rapid Response to Elicitors AT3G05200 37.153 3.12e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00628 K10664 - gmx:100782532 355.525