Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00620 ATGGCCCCGCCGCCCACGGTGGAACACAACCTTGACTCCACCACTACCTCTTCTGTCGCGGTGACGGACTCTCAGAGATCCATCCCCACGCCGTTCCTAACCAAAACCTACCAACTCGTCGACGATCAATCCATCGACGATGTCATCTCATGGAACGAAGACGGATCCACCTTCATCGTTTGGAACCCTACCGTCTTTGCCAGAGACTTGCTTCCTAAATATTTTAAGCATAACAATTTCTCCAGCTTCGTCCGCCAACTCAACACTTACGGATTCAGGAAAGTTGTACCTGACCGGTGGGAATTCTCGAACGAGTGTTTCCGCCGCGGCGAGAAGCGGCTTCTCTGCGAGATTCAGCGGCGGAAGATCTCGTCACCGGGGCCGGCGACGTCGCCGGTAGCAACGCCAACCGCAACGGTCACGGTTCCCGCGCCGATGCCTTTGACTGCGATACCGATCATCTCGCCGTCAAACTCCGGCGAGGAGCAGGTGATATCGTCGAATTCATCTCCGTCGCGAGCACCGGCGGAACTTCTCGACGAGAACGAGAGGCTGAGGAAAGAGAACGTTCAACTGACGAAAGAGCTCGCGGAGATGAGATCGCTCTGCAACAATATATACTCTCTCATGTCTAATTATGTCAGCGTCACCGGTAACGGAAACGCTAACAACGGCAGCGGGAGTTACCAAACGGAAAACGGTGTCGGTGGTGCACAGGGGAGCAGAGAGTCCGGCATGACGGCGGTGAAGCCGCTGGAGTTGATGCCGGTGAAACGGAGCTCCGGCGATGATGCGGCGGAAACGGCACCGGAGGAGATGAATGCGAAGCTGTTTGGCGTGGCGATTGGAGCAAAGCGAGCGAGGGAGGGAGGAGGAAGCGGTGGAAAAGGAGAGGAAGATACGCTGCTGCGGCTGCATAACCCGGATCCGCAGCTAGGTCCTGCAGATGTGAAATCAGAACCGTTGGATAGTCAGAATCATTGTGATAATCAGGAGACTCCATGGTTGAGTCACTATAGACCAATCAGGGGGTGTGTAACTGACACACGGTGA 1053 0.5546 MAPPPTVEHNLDSTTTSSVAVTDSQRSIPTPFLTKTYQLVDDQSIDDVISWNEDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLCEIQRRKISSPGPATSPVATPTATVTVPAPMPLTAIPIISPSNSGEEQVISSNSSPSRAPAELLDENERLRKENVQLTKELAEMRSLCNNIYSLMSNYVSVTGNGNANNGSGSYQTENGVGGAQGSRESGMTAVKPLELMPVKRSSGDDAAETAPEEMNAKLFGVAIGAKRAREGGGSGGKGEEDTLLRLHNPDPQLGPADVKSEPLDSQNHCDNQETPWLSHYRPIRGCVTDTR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00620 350 MobiDBLite consensus disorder prediction 158 175 - -
Cca08g00620 350 MobiDBLite consensus disorder prediction 1 20 - -
Cca08g00620 350 Coils Coil 182 202 - -
Cca08g00620 350 Pfam HSF-type DNA-binding 32 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g00620 350 SMART hsfneu3 28 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g00620 350 ProSitePatterns HSF-type DNA-binding domain signature. 71 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g00620 350 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g00620 350 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g00620 350 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca08g00620 350 MobiDBLite consensus disorder prediction 291 305 - -
Cca08g00620 350 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 333 IPR027725 -
Cca08g00620 350 MobiDBLite consensus disorder prediction 286 334 - -
Cca08g00620 350 Gene3D - 24 122 IPR036388 -
Cca08g00620 350 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 15 333 - -
Cca08g00620 350 SUPERFAMILY "Winged helix" DNA-binding domain 29 121 IPR036390 -
Cca08g00620 350 MobiDBLite consensus disorder prediction 158 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00620 Cca-Chr8 11027111 11028981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00620 22 339 HSF AT5G62020 48.955 3.20e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca08g00620 HSF_DNA-bind 1.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00620 K09419 - gmx:100812267 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00620 08 11027111 11028981 Cca02g02280 02 43311604 43312764 PCT